ggKbase home page

13_2_20cm_scaffold_2052

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2052_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(3..170)
DNA (168bp) protein (56aa)
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_scaffold_2052_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(319..903)
DNA (585bp) protein (195aa)
adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RBG_13_Bathyarchaeota_38_9_curated
adkA; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3T9E3_9CREN
13_2_20cm_scaffold_2052_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(918..2279)
DNA (1362bp) protein (454aa)
Protein translocase subunit SecY n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U2G8_9ARCH
hypothetical protein; K10956 protein transport protein SEC61 subunit alpha Tax=RBG_16_Archaea_50_20_curated
preprotein translocase subunit SecY
13_2_20cm_scaffold_2052_4
Aeropyrum camini, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


comp(2415..2783)
DNA (369bp) protein (123aa)
50S ribosomal protein L15P n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3TEH7_9CREN
rpl15p; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=1198449 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum camini S
13_2_20cm_scaffold_2052_5
unknown

Not on your lists

2869..3144
DNA (276bp) protein (92aa)

This feature has no annotations

13_2_20cm_scaffold_2052_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3372..3953
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID75_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59341.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_2_20cm_scaffold_2052_7
Aciduliprofundum sp. MAR08-339, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists

comp(4062..6443)
DNA (2382bp) protein (794aa)
Putative protease n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HKP5_ACIS0
putative protease
Putative protease {ECO:0000313|EMBL:AGB04610.1}; Flags: Precursor;; TaxID=673860 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum sp. (strain MAR08-339).;"
13_2_20cm_scaffold_2052_8
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6848..7123)
DNA (276bp) protein (92aa)
3-methyladenine DNA glycosylase {ECO:0000313|EMBL:ETA67512.1}; EC=3.2.2.20 {ECO:0000313|EMBL:ETA67512.1};; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosar
UPI0003D1B903 related cluster n=1 Tax=unknown RepID=UPI0003D1B903
13_2_20cm_scaffold_2052_9
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7123..7677)
DNA (555bp) protein (185aa)
DNA-3-methyladenine glycosylase I family protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12W25_METBU
3-methyladenine DNA glycosylase-like protein Tax=RBG_16_Gammaproteobacteria_51_14_curated
3-methyladenine DNA glycosylase-like protein
13_2_20cm_scaffold_2052_10

Not on your lists

7850..8560
DNA (711bp) protein (237aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ56872.1}; TaxID=1502293 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-
hypothetical protein id=5048335 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
13_2_20cm_scaffold_2052_11

Not on your lists

8571..9356
DNA (786bp) protein (262aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ56873.1}; TaxID=1502293 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-
hypothetical protein id=5048336 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
13_2_20cm_scaffold_2052_12
unknown

Not on your lists

9465..9719
DNA (255bp) protein (85aa)

This feature has no annotations

13_2_20cm_scaffold_2052_13
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10442..10918
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JFK9_ANAD2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL66386.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
13_2_20cm_scaffold_2052_14
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(11238..11648)
DNA (411bp) protein (137aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E0V2_DICTD
S-adenosylmethionine decarboxylase
13_2_20cm_scaffold_2052_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


12362..12862
DNA (501bp) protein (167aa)
30S ribosomal protein S13 n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=RS13_STAMF
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
rps13p; 30S ribosomal protein S13
13_2_20cm_scaffold_2052_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


12877..13563
DNA (687bp) protein (229aa)
30S ribosomal protein S4 n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=RS4_THESM
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S4
13_2_20cm_scaffold_2052_17
unknown

Not on your lists

13606..14151
DNA (546bp) protein (182aa)

This feature has no annotations

13_2_20cm_scaffold_2052_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

14369..15004
DNA (636bp) protein (212aa)
rpoD; DNA-directed RNA polymerase subunit D; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
RNA polymerase insert
13_2_20cm_scaffold_2052_19
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


15001..15459
DNA (459bp) protein (153aa)
50S ribosomal protein L13 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ17_PYRSN
50S ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA
13_2_20cm_scaffold_2052_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


15456..15866
DNA (411bp) protein (137aa)
30S ribosomal protein S9 n=1 Tax=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) RepID=RS9_DESK1
rps9p; ribosomal protein S9P Rps9p; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S9
13_2_20cm_scaffold_2052_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


16114..16791
DNA (678bp) protein (226aa)
30S ribosomal protein S2 n=4 Tax=Methanobrevibacter RepID=RS2_METS3
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
rps2P; 30S ribosomal protein S2
13_2_20cm_scaffold_2052_22
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

16788..17636
DNA (849bp) protein (283aa)
MEMO1 family protein Mfer_0894 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZG0_METFV
dioxygenase; K06990 Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_2_20cm_scaffold_2052_23
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

17701..18594
DNA (894bp) protein (298aa)
mvk; mevalonate kinase (EC:2.7.1.36)
mevalonate kinase n=1 Tax=Actinobaculum urinale RepID=UPI0003B76D7A
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
13_2_20cm_scaffold_2052_24
CG_Pacebac_01, Pacebacteria, Microgenomates, Bacteria

Not on your lists

18709..19104
DNA (396bp) protein (132aa)
nudix hydrolase 3 (EC:3.6.1.-) Tax=CG_Pacebac_01
NUDIX hydrolase id=5084688 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
NUDIX hydrolase
13_2_20cm_scaffold_2052_25
GWF2_TM6_30_66, TM6, Bacteria

Not on your lists

19258..19785
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00034C24BF
Isopentenyl-diphosphate Delta-isomerase Tax=GWF2_TM6_30_66
isopentenyl-diphosphate delta-isomerase Idi
13_2_20cm_scaffold_2052_26
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

19840..21174
DNA (1335bp) protein (445aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_13_Bathyarchaeota_38_9_curated
3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=uncultured archaeon RepID=D1JD30_9ARCH
3-hydroxy-3-methylglutaryl-coenzyme A reductase
13_2_20cm_scaffold_2052_27
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(21115..22020)
DNA (906bp) protein (302aa)
putative (S)-2,3-Di-O-farnesylgeranylglyceryl synthase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase n=1 Tax=Caldisphaera lagunensis (strain DSM 15908 / JCM 11604 / IC-154) RepID=L0A834_CALLD
4-hydroxybenzoate polyprenyltransferase
13_2_20cm_scaffold_2052_28
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

22081..22536
DNA (456bp) protein (152aa)
ferritin; K03594 bacterioferritin id=14424664 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
ferritin; K03594 bacterioferritin Tax=CSP1_2_Dadabacteria
Ferritin, Dps family protein
13_2_20cm_scaffold_2052_29
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(22552..23466)
DNA (915bp) protein (305aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3) Tax=RBG_16_Thaumarchaeota_49_8_curated
glutamate dehydrogenase (EC:1.4.1.2 1.4.1.3)
Glu/Leu/Phe/Val dehydrogenase, C terminal n=1 Tax=uncultured organism RepID=M1Q2T1_9ZZZZ
Displaying 29 items

View Taxonomy