ggKbase home page

13_2_20cm_scaffold_2240

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2240_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(43..996)
-----------------
DNA (954bp)
protein (318aa)
TruB; H/ACA RNA-protein complex component Cbf5p; K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_2_20cm_scaffold_2240_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(993..1532)
-----------------
DNA (540bp)
protein (180aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000362DA85
cytidylate kinase, putative Tax=RBG_16_Euryarchaeota_67_27_curated
cytidylate kinase, putative
13_2_20cm_scaffold_2240_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1543..2352)
-----------------
DNA (810bp)
protein (270aa)
Putative membrane protein n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HJS1_ACIS0
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_2_20cm_scaffold_2240_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2408..2776)
-----------------
DNA (369bp)
protein (123aa)
Prefoldin subunit beta n=1 Tax=Candidatus Methanomethylophilus alvus Mx1201 RepID=M9SB76_9EURY
Prefoldin beta subunit (GimC beta subunit) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Prefoldin beta subunit (GimC beta subunit)
13_2_20cm_scaffold_2240_5
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(2773..3006)
-----------------
DNA (234bp)
protein (78aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000373F7F7
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_2_20cm_scaffold_2240_6
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(3009..3143)
-----------------
DNA (135bp)
protein (45aa)
rpoP; DNA-directed RNA polymerase subunit P (EC:2.7.7.6) Tax=RBG_16_Euryarchaeota_68_13_curated
rpoP; DNA-directed RNA polymerase subunit P (EC:2.7.7.6)
DNA-directed RNA polymerase subunit P n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T548_9EURY
13_2_20cm_scaffold_2240_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3145..3432)
-----------------
DNA (288bp)
protein (96aa)
50S ribosomal protein L37Ae n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=RL37A_THESM
50S ribosomal protein L37Ae Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rpl37ae; 50S ribosomal protein L37
13_2_20cm_scaffold_2240_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(3441..4220)
-----------------
DNA (780bp)
protein (260aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037C197A
exosome complex RNA-binding protein Rrp42 Tax=RBG_16_Euryarchaeota_67_27_curated
3' exoribonuclease
13_2_20cm_scaffold_2240_9
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(4220..5059)
-----------------
DNA (840bp)
protein (280aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037D8B2C
exosome complex exonuclease Rrp41 Tax=RBG_16_Euryarchaeota_68_13_curated
exosome complex exonuclease Rrp41
13_2_20cm_scaffold_2240_10
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(5072..5770)
-----------------
DNA (699bp)
protein (233aa)
Exosome complex component Rrp4 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5L6_9EURY
RNA-binding protein Rrp4 (containing S1 domain and KH domain) Tax=RBG_16_Euryarchaeota_67_27_curated
exosome complex RNA-binding protein Rrp4
13_2_20cm_scaffold_2240_11
unknown

Not on your lists

comp(5887..6114)
-----------------
DNA (228bp)
protein (76aa)

This feature has no annotations

13_2_20cm_scaffold_2240_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(6145..6885)
-----------------
DNA (741bp)
protein (247aa)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IEK0_ACIB4
rRNA metabolism protein, SBDS family Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RNA-associated protein
13_2_20cm_scaffold_2240_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(6894..7619)
-----------------
DNA (726bp)
protein (242aa)
proteasome subunit alpha (EC:3.4.25.1) Tax=RBG_16_Euryarchaeota_67_27_curated
proteasome subunit alpha (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T884_9EURY rbh
13_2_20cm_scaffold_2240_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(7979..9118)
-----------------
DNA (1140bp)
protein (380aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036F8613 rbh
cell division protein FtsZ Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
cell division protein FtsZ
13_2_20cm_scaffold_2240_15
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(9247..10011)
-----------------
DNA (765bp)
protein (255aa)
KaiA binding domain protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YAJ6_9ZZZZ
RecA family AAA ATPase Tax=RBG_16_Euryarchaeota_68_13_curated
RecA family AAA ATPase
13_2_20cm_scaffold_2240_16
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(10026..11108)
-----------------
DNA (1083bp)
protein (361aa)
KaiA binding domain protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YAJ6_9ZZZZ
RecA family AAA ATPase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Sigma 54 interacting domain protein
13_2_20cm_scaffold_2240_17
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(11518..11847)
-----------------
DNA (330bp)
protein (110aa)
SCP-2 sterol transfer family protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T828_9EURY
sterol carrier protein Tax=RBG_16_Euryarchaeota_68_13_curated
SCP-2 sterol transfer family protein
13_2_20cm_scaffold_2240_18
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(11844..12284)
-----------------
DNA (441bp)
protein (147aa)
rnhB; ribonuclease HII (EC:3.1.26.4) Tax=RBG_16_Euryarchaeota_68_13_curated
Ribonuclease HII n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IDD6_ACIB4
ribonuclease HII
Displaying 18 items

View Taxonomy