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13_2_20cm_scaffold_2677

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2677_1
Candidatus Saccharibacteria bacterium RAAC3_TM7_1, Candidatus Saccharibacteria, Bacteria

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comp(3..224)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00036CDEA6
cell division protein septum formation
Cell division protein septum formation {ECO:0000313|EMBL:AHB41924.1}; TaxID=1394711 species="Bacteria; Candidatus Saccharibacteria.;" source="Candidatus Saccharibacteria bacterium RAAC3_TM7_1.;"
13_2_20cm_scaffold_2677_2
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(388..2967)
DNA (2580bp) protein (860aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C426_SPHTD
13_2_20cm_scaffold_2677_3
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(3042..3638)
DNA (597bp) protein (199aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxal 5'-phosphate synthase {ECO:0000256|SAAS:SAAS00025317}; EC=1.4.3.5 {ECO:0000256|SAAS:SAAS00025317};; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaero
Pyridoxamine 5'-phosphate oxidase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7W4_SPHTD
13_2_20cm_scaffold_2677_4
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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comp(3638..4420)
DNA (783bp) protein (261aa)
sigma-B/F/G subfamily RNA polymerase sigma-28 factor; K03090 RNA polymerase sigma-B factor id=24415222 bin=RBG_19FT_COMBO_GAL15_69_19 species=Atopobium sp. oral taxon 199 genus=Atopobium taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
sigma-B/F/G subfamily RNA polymerase sigma-28 factor; K03090 RNA polymerase sigma-B factor Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
sigma-B/F/G subfamily RNA polymerase sigma-28 factor
13_2_20cm_scaffold_2677_5
unknown

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comp(4448..4867)
DNA (420bp) protein (140aa)

This feature has no annotations

13_2_20cm_scaffold_2677_6
unknown

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comp(4879..5205)
DNA (327bp) protein (109aa)

This feature has no annotations

13_2_20cm_scaffold_2677_7
unknown

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comp(5208..5513)
DNA (306bp) protein (102aa)

This feature has no annotations

13_2_20cm_scaffold_2677_8
unknown

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comp(5592..5882)
DNA (291bp) protein (97aa)

This feature has no annotations

13_2_20cm_scaffold_2677_9
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(6075..6338)
DNA (264bp) protein (88aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TL73_9CHLR
Suspect SCG annotation. See neighboring gene [13_2_20cm_scaffold_2677_10].
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EFH86523.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter race
13_2_20cm_scaffold_2677_10
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6335..7786)
DNA (1452bp) protein (484aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=RBG_13_Deltaproteobacteria_65_10_curated
Aspartate--tRNA ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C339_SPHTD
aspartyl-tRNA synthetase
13_2_20cm_scaffold_2677_11
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7783..8988)
DNA (1206bp) protein (402aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
Histidine--tRNA ligase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WWX7_KYRT2
13_2_20cm_scaffold_2677_12
unknown

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9057..9320
DNA (264bp) protein (88aa)

This feature has no annotations

13_2_20cm_scaffold_2677_13
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9317..10930)
DNA (1614bp) protein (538aa)
Hybrid signal transduction histidine kinase J {ECO:0000313|EMBL:KFC74944.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFC74944.1};; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholder
Signal transduction histidine kinase n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SDS1_9DELT
sensory box histidine kinase/response regulator
13_2_20cm_scaffold_2677_14
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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comp(10930..12456)
DNA (1527bp) protein (509aa)
Type II secretion system protein E n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C140_SPHTD
type II secretion system protein E; K02283 pilus assembly protein CpaF Tax=RBG_16_RIF_CHLX_72_14_curated
type II secretion system protein E
13_2_20cm_scaffold_2677_15
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(12453..13295)
DNA (843bp) protein (281aa)
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
13_2_20cm_scaffold_2677_16
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

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13386..14627
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI00036462F1
response regulator receiver; K02282 pilus assembly protein CpaE Tax=RBG_16_RIF_CHLX_69_14_curated
cobyrinic acid a,c-diamide synthase
13_2_20cm_scaffold_2677_17
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

14620..15114
DNA (495bp) protein (165aa)
Putative TadE-like family protein n=2 Tax=Arthrobacter RepID=A1R8Q5_ARTAT
TadE family protein Tax=CG_Arma_02
TadE-like family protein
13_2_20cm_scaffold_2677_18
unknown

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15111..15728
DNA (618bp) protein (206aa)

This feature has no annotations

13_2_20cm_scaffold_2677_19
unknown

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15728..16267
DNA (540bp) protein (180aa)

This feature has no annotations

Displaying 19 items

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