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13_2_20cm_scaffold_2708

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2708_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1..411)
-----------------
DNA (411bp)
protein (137aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=14626276 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
alanyl-tRNA synthetase (EC:6.1.1.7)
13_2_20cm_scaffold_2708_2
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

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comp(408..665)
-----------------
DNA (258bp)
protein (86aa)
GCN5-related N-acetyltransferase n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J8S5_NOSP7
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACC82563.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 731
13_2_20cm_scaffold_2708_3
unknown

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1028..1438
-----------------
DNA (411bp)
protein (137aa)

This feature has no annotations

13_2_20cm_scaffold_2708_4
unknown

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1533..2222
-----------------
DNA (690bp)
protein (230aa)

This feature has no annotations

13_2_20cm_scaffold_2708_5
unknown

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comp(2045..2605)
-----------------
DNA (561bp)
protein (187aa)

This feature has no annotations

13_2_20cm_scaffold_2708_6
unknown

Not on your lists

comp(2833..3597)
-----------------
DNA (765bp)
protein (255aa)

This feature has no annotations

13_2_20cm_scaffold_2708_7

Not on your lists

comp(3753..4256)
-----------------
DNA (504bp)
protein (168aa)
hypothetical protein n=1 Tax=cyanobacterium PCC 7702 RepID=UPI00037434E0
Marine sediment metagenome DNA, contig: S03H2_S15746 {ECO:0000313|EMBL:GAH68145.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
N-acetyltransferase GCN5
13_2_20cm_scaffold_2708_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4294..4755)
-----------------
DNA (462bp)
protein (154aa)
regulatory protein RecX; K03565 regulatory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
recX; recombination regulator RecX; K03565 regulatory protein id=14626277 bin=bin7_NC10_sister species=Amycolatopsis nigrescens genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
regulatory protein RecX
13_2_20cm_scaffold_2708_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4854..5978)
-----------------
DNA (1125bp)
protein (375aa)
pilT; Twitching mobility protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Twitching motility protein id=4140654 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
twitching motility protein
13_2_20cm_scaffold_2708_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


comp(5979..6998)
-----------------
DNA (1020bp)
protein (340aa)
RecA; RecA/RadA recombinase; K03553 recombination protein RecA id=14626279 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
RecA; RecA/RadA recombinase; K03553 recombination protein RecA Tax=CSP1_6_Rokubacteria
recA protein
13_2_20cm_scaffold_2708_11
unknown

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comp(7095..7286)
-----------------
DNA (192bp)
protein (64aa)

This feature has no annotations

13_2_20cm_scaffold_2708_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(7295..7942)
-----------------
DNA (648bp)
protein (216aa)
Uncharacterized protein id=4350121 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_2_20cm_scaffold_2708_13
unknown

Not on your lists

comp(7939..8091)
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

13_2_20cm_scaffold_2708_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8318..8938)
-----------------
DNA (621bp)
protein (207aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK68_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_scaffold_2708_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8920..9636)
-----------------
DNA (717bp)
protein (239aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002D6A494
peptidase C14, caspase catalytic subunit p20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_scaffold_2708_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9633..10901)
-----------------
DNA (1269bp)
protein (423aa)
cinA; competence-damage inducible protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CinA-like protein id=4911882 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
competence/damage-inducible protein cinA
13_2_20cm_scaffold_2708_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10892..11362)
-----------------
DNA (471bp)
protein (157aa)
phosphatidylglycerophosphatase A; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phosphatidylglycerophosphatase A; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] id=14627982 bin=bin7_NC10_sister species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=bin7_NC10_sister organism_group=NC10
phosphatidylglycerophosphatase (EC:3.1.3.27)
13_2_20cm_scaffold_2708_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11376..12314)
-----------------
DNA (939bp)
protein (313aa)
MiaB-like tRNA modifying enzyme YliG; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal protein S12 methylthiotransferase RimO id=4911884 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 18 items

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