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13_2_20cm_scaffold_3049

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3049_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1..600)
DNA (600bp) protein (200aa)
Type IV pilus biogenesis protein PilM n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY9_9BACT
pilM; type IV pilus biogenesis protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pilM; type IV pilus biogenesis protein PilM
13_2_20cm_scaffold_3049_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1067..2536)
DNA (1470bp) protein (490aa)
RNA polymerase, sigma-54 (Sigma N) factor n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY5_9BACT
rpoN; RNA polymerase, sigma-54 (sigma N) factor; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpoN; RNA polymerase, sigma-54 (sigma N) factor
13_2_20cm_scaffold_3049_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(2552..3313)
DNA (762bp) protein (254aa)
lptB; putative lipopolysaccharide ABC transporter ATPase (EC:3.6.3.-)
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system {ECO:0000313|EMBL:CBK41093.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBK41093.1};; TaxID=330214 species="Bacteria; Nitr
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY4_9BACT
13_2_20cm_scaffold_3049_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3310..3810)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY3_9BACT
hypothetical protein; K09774 lipopolysaccharide export system protein LptA Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_2_20cm_scaffold_3049_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3788..4372)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY2_9BACT
hypothetical protein
hypothetical protein; K11719 lipopolysaccharide export system protein LptC Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_2_20cm_scaffold_3049_6
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(4468..4938)
DNA (471bp) protein (157aa)
50S ribosomal protein L17 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY1_9BACT
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_2_20cm_scaffold_3049_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(4948..5952)
DNA (1005bp) protein (335aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:
DNA-directed RNA polymerase subunit alpha n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY0_9BACT rbh
13_2_20cm_scaffold_3049_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


comp(6025..6651)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX9_9BACT rbh
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsD; 30S ribosomal protein S4
13_2_20cm_scaffold_3049_9
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(6754..7137)
DNA (384bp) protein (128aa)
30S ribosomal protein S11 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX8_9BACT
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310, ECO:0000313|EMBL:CBK41087.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus N
13_2_20cm_scaffold_3049_10
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7225..7605)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IIR5_THETR
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=698948 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoan
13_2_20cm_scaffold_3049_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(7779..7997)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=3 Tax=Bacillus megaterium RepID=D5D9S8_BACMD
translation initiation factor 1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
infA; translation initiation factor IF-1
13_2_20cm_scaffold_3049_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(8008..8784)
DNA (777bp) protein (259aa)
map; methionyl aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
map; methionine aminopeptidase (EC:3.4.11.18) id=14428873 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10 rbh
map; methionyl aminopeptidase (EC:3.4.11.18)
13_2_20cm_scaffold_3049_13
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(8781..9440)
DNA (660bp) protein (220aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BAU5_9EURY
Adenylate kinase
13_2_20cm_scaffold_3049_14
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists


comp(9445..10695)
DNA (1251bp) protein (417aa)
Protein translocase subunit SecY n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX2_9BACT
secY; preprotein translocase, membrane subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
secY; preprotein translocase, membrane subunit SecY
13_2_20cm_scaffold_3049_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(10688..11137)
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX1_9BACT
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_2_20cm_scaffold_3049_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(11134..11748)
DNA (615bp) protein (205aa)
Conserved repeat domain protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WPA3_GEOS8
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
Displaying 16 items

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