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13_2_20cm_scaffold_3065

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3065_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2..406)
-----------------
DNA (405bp)
protein (135aa)
Tetratricopeptide TPR_2 id=3960130 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_3065_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(403..810)
-----------------
DNA (408bp)
protein (136aa)
Kelch repeat-containing protein id=3960133 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Kelch repeat-containing protein Tax=GWA2_Rokubacteria_73_35_curated
Kelch repeat-containing protein
13_2_20cm_scaffold_3065_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1309..2589)
-----------------
DNA (1281bp)
protein (427aa)
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2)
DNA ligase id=4424809 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_3065_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2628..3254)
-----------------
DNA (627bp)
protein (209aa)
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2)
DNA ligase id=4424810 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_3065_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3370..4086
-----------------
DNA (717bp)
protein (239aa)
DtxR family iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator id=14625222 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
DtxR family iron dependent repressor
13_2_20cm_scaffold_3065_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4083..4439
-----------------
DNA (357bp)
protein (119aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_2_20cm_scaffold_3065_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4441..5385)
-----------------
DNA (945bp)
protein (315aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c family protein id=4062400 bin=GWF2_Methylomirabilis_70_14 species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3065_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5382..5855)
-----------------
DNA (474bp)
protein (158aa)
cycL; cytochrome c-type biogenesis protein cycL Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c-type biogenesis protein cycL id=4062401 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cycL; cytochrome c-type biogenesis protein cycL
13_2_20cm_scaffold_3065_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5852..6388)
-----------------
DNA (537bp)
protein (179aa)
ccmG; periplasmic thioredoxin (cytochrome c biogenesis) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Periplasmic thioredoxin (Cytochrome c biogenesis) id=4062402 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmG; periplasmic thioredoxin (cytochrome c biogenesis)
13_2_20cm_scaffold_3065_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6385..8328)
-----------------
DNA (1944bp)
protein (648aa)
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cycK; cytochrome c-type biogenesis protein cycK id=14625137 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cycK; cytochrome c-type biogenesis protein cycK
13_2_20cm_scaffold_3065_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8325..8765)
-----------------
DNA (441bp)
protein (147aa)
ccmE; cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ccmE; cytochrome c-type biogenesis protein CcmE id=14625136 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ccmE; cytochrome c-type biogenesis protein CcmE
13_2_20cm_scaffold_3065_12
unknown

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comp(8762..8953)
-----------------
DNA (192bp)
protein (64aa)

This feature has no annotations

13_2_20cm_scaffold_3065_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(8950..9441)
-----------------
DNA (492bp)
protein (164aa)
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis) Tax=GWA2_Rokubacteria_73_35_curated
Heme ABC transporter (Heme exporter protein C), permease protein (Cytochrome c biogenesis) id=4343481 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis)
13_2_20cm_scaffold_3065_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9539..10189)
-----------------
DNA (651bp)
protein (217aa)
Heme exporter, protein B Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c-type biogenesis protein CcmB id=4343483 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmB; heme exporter protein CcmB
13_2_20cm_scaffold_3065_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10213..10932)
-----------------
DNA (720bp)
protein (240aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4343485 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3065_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11060..11986
-----------------
DNA (927bp)
protein (309aa)
Binding-protein-dependent transport systems inner membrane component id=3980008 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transport system inner membrane protein; K15581 oligopeptide transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_3065_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12096..12881
-----------------
DNA (786bp)
protein (262aa)
Binding-protein-dependent transport systems inner membrane component id=3980007 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=GWC2_Rokubacteria_70_16_curated
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_3065_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12900..13418
-----------------
DNA (519bp)
protein (173aa)
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein id=3741107 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
family 5 extracellular solute-binding protein
13_2_20cm_scaffold_3065_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13385..13921
-----------------
DNA (537bp)
protein (179aa)
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein id=3741107 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein
13_2_20cm_scaffold_3065_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13971..14468
-----------------
DNA (498bp)
protein (166aa)
Extracellular solute-binding protein family 5 id=2591445 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
family 5 extracellular solute-binding protein
13_2_20cm_scaffold_3065_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14518..15369)
-----------------
DNA (852bp)
protein (284aa)
peptidase M48, Ste24p; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] id=14625131 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
protease HtpX
13_2_20cm_scaffold_3065_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15508..16017
-----------------
DNA (510bp)
protein (170aa)
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4343489 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3065_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


16027..16209
-----------------
DNA (183bp)
protein (61aa)
rpmF; 50S ribosomal protein L32 RpmF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L32 id=4343491 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmF; 50S ribosomal protein L32 RpmF
13_2_20cm_scaffold_3065_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16234..16833
-----------------
DNA (600bp)
protein (200aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=GWA2_Rokubacteria_73_35_curated
Phosphate acyltransferase id=2547032 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fatty acid/phospholipid synthesis protein PlsX
Displaying 24 items

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