ggKbase home page

13_2_20cm_scaffold_3242

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3242_1
unknown

Not on your lists

1..78
DNA (78bp) protein (26aa)

This feature has no annotations

13_2_20cm_scaffold_3242_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(79..1845)
DNA (1767bp) protein (589aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626738 bin=bin7_NC10_sister species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_2_20cm_scaffold_3242_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1857..3188)
DNA (1332bp) protein (444aa)
gliding motility ABC transporter auxillary protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=4034167 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gliding motility ABC transporter auxillary protein
13_2_20cm_scaffold_3242_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3173..3331)
DNA (159bp) protein (53aa)
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=4034167 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gliding motility ABC transporter auxillary protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_3242_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3319..4044)
DNA (726bp) protein (242aa)
multi-copper enzyme maturation ABC transporter permease Tax=GWA2_Rokubacteria_73_35_curated
multi-copper enzyme maturation ABC transporter permease id=14626740 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-copper enzyme maturation ABC transporter permease
13_2_20cm_scaffold_3242_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4041..5033)
DNA (993bp) protein (331aa)
ABC transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter id=14626741 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
ABC transporter
13_2_20cm_scaffold_3242_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5069..5425)
DNA (357bp) protein (119aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4830683 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thioesterase superfamily protein
13_2_20cm_scaffold_3242_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5470..6411)
DNA (942bp) protein (314aa)
pan; proteasome-activating nucleotidase; K03420 proteasome regulatory subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Proteasome-activating nucleotidase id=4165965 bin=GWF2_Methylomirabilis_70_14 species=Thermosphaera aggregans genus=Thermosphaera taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
26S proteasome subunit P45 family
13_2_20cm_scaffold_3242_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6416..6883)
DNA (468bp) protein (156aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=5020386 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3242_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6931..8112)
DNA (1182bp) protein (394aa)
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member id=4830686 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member
13_2_20cm_scaffold_3242_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8127..9107
DNA (981bp) protein (327aa)
Thioesterase superfamily protein id=5020384 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Thioesterase superfamily protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_3242_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9146..9532
DNA (387bp) protein (129aa)
hypothetical protein id=14628067 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_3242_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9529..10686)
DNA (1158bp) protein (386aa)
epoxide hydrolase (EC:3.3.2.9); K01253 microsomal epoxide hydrolase [EC:3.3.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein OPAG_01638 id=2521458 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Putative epoxide hydrolase
13_2_20cm_scaffold_3242_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10683..11066)
DNA (384bp) protein (128aa)
ArsC family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ArsC family protein id=5020381 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutaredoxin family protein, arsenate reductase
13_2_20cm_scaffold_3242_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11063..11938)
DNA (876bp) protein (292aa)
metal-dependent phosphoesterase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PHP domain protein id=5020380 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal-dependent phosphoesterase
13_2_20cm_scaffold_3242_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11941..13782)
DNA (1842bp) protein (614aa)
cytosol aminopeptidase (LAP) (Leucyl aminopeptidase) PepA (EC:3.4.11.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase id=5020379 bin=GWA2_Methylomirabilis_73_35 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3242_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13779..14558)
DNA (780bp) protein (260aa)
lipoate protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Octanoyltransferase LipM id=5020377 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin/lipoate A/B protein ligase
13_2_20cm_scaffold_3242_18
unknown

Not on your lists

comp(14650..14781)
DNA (132bp) protein (44aa)

This feature has no annotations

13_2_20cm_scaffold_3242_19
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15384..15902)
DNA (519bp) protein (173aa)
Putative phosphatase, C-terminal domain of histone macro H2A1 like protein n=1 Tax=Polaromonas sp. CF318 RepID=J3D779_9BURK
Appr-1-p processing domain-containing protein Tax=CG_Gallio_01
Appr-1-p processing domain-containing protein
13_2_20cm_scaffold_3242_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15937..17397)
DNA (1461bp) protein (487aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] id=14628075 bin=bin7_NC10_sister species=Geobacillus sp. GHH01 genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
gcvPB; putative glycine dehydrogenase [decarboxylating] subunit 2 (EC:1.4.4.2)
13_2_20cm_scaffold_3242_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17397..17888)
DNA (492bp) protein (164aa)
gcvPA; GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=GWA2_Rokubacteria_73_35_curated
Probable glycine dehydrogenase [decarboxylating] subunit 1 id=4193476 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine cleavage system protein P
Displaying 21 items

View Taxonomy