ggKbase home page

13_2_20cm_scaffold_3270

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3270_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

13_2_20cm_scaffold_3270_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99..1184)
DNA (1086bp) protein (362aa)
pyruvate formate lyase-activating protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A35D7 rbh
radical SAM family protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
hypothetical protein
13_2_20cm_scaffold_3270_3
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1181..2545)
DNA (1365bp) protein (455aa)
hypothetical protein; K06990 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
hypothetical protein; K06990 id=12494613 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
13_2_20cm_scaffold_3270_4
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2567..3046)
DNA (480bp) protein (160aa)
CinA domain-containing protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABG4_9PROT
damage inducible protein CinA; K03743 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
CinA domain-containing protein
13_2_20cm_scaffold_3270_5
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3046..3534)
DNA (489bp) protein (163aa)
phosphatidylglycerophosphatase A; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
Phosphatidylglycerophosphatase A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH50_9PROT
phosphatidylglycerophosphatase A
13_2_20cm_scaffold_3270_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3531..4340)
DNA (810bp) protein (270aa)
thiL; thiamine monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
thiL; thiamine monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=2 Tax=Burkholderiaceae RepID=Q0K6Z2_CUPNH
13_2_20cm_scaffold_3270_7
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4463..4891)
DNA (429bp) protein (143aa)
N utilization substance protein B homolog n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQE6_ACCPU
nusB; transcription antitermination protein NusB; K03625 N utilization substance protein B Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
NusB antitermination factor
13_2_20cm_scaffold_3270_8
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4878..5291)
DNA (414bp) protein (138aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Burkholderia kururiensis RepID=UPI000344AE62
6,7-dimethyl-8-ribityllumazine synthase
13_2_20cm_scaffold_3270_9
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5299..6411)
DNA (1113bp) protein (371aa)
ribB2; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R5U8_CUPTR rbh
bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein
13_2_20cm_scaffold_3270_10
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6433..6810)
DNA (378bp) protein (126aa)
50S ribosomal protein L19 n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000372799B
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
rplS; ribosomal protein L19
13_2_20cm_scaffold_3270_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6812..7552)
DNA (741bp) protein (247aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4KAF7_THASP rbh
trmD; tRNA (guanine-N(1)-)-methyltransferase
13_2_20cm_scaffold_3270_12
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7549..8016)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000363A9B6
16S rRNA processing protein rimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
rimM; 16S rRNA processing protein RimM
13_2_20cm_scaffold_3270_13
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8030..8281)
DNA (252bp) protein (84aa)
30S ribosomal protein S16 n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=RS16_NITEC
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
rpsP; 30S ribosomal protein S16
13_2_20cm_scaffold_3270_14
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8372..8716
DNA (345bp) protein (115aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
13_2_20cm_scaffold_3270_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8718..10067)
DNA (1350bp) protein (450aa)
signal recognition particle protein Srp54 n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00036D66B3
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
signal recognition particle protein
13_2_20cm_scaffold_3270_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10123..10926
DNA (804bp) protein (268aa)
Cytochrome c assembly protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUN9_ACCPU
cytochrome c assembly protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
cytochrome C assembly protein
13_2_20cm_scaffold_3270_17
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10928..12229
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y746_NITMU
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
hypothetical protein
13_2_20cm_scaffold_3270_18
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12304..13281
DNA (978bp) protein (326aa)
Type II secretory pathway, component PulF n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QME1_AZOSU rbh
type II secretory pathway, component PulF; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
type II secretory pathway, component PulF
Displaying 18 items

View Taxonomy