ggKbase home page

13_2_20cm_scaffold_317

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_317_1
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..754)
DNA (753bp) protein (251aa)
Oxidoreductase domain protein id=4574515 bin=GWC2_Deltaproteobacteria_55_46 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
oxidoreductase domain-containing protein Tax=GWC2_Deltaproteobacteria_55_46b_curated
oxidoreductase domain-containing protein
13_2_20cm_scaffold_317_2
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(771..1358)
DNA (588bp) protein (196aa)
undecaprenyl-phosphate galactose phosphotransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
13_2_20cm_scaffold_317_3
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1455..2765)
DNA (1311bp) protein (437aa)
DegT/DnrJ/EryC1/StrS aminotransferase id=3543948 bin=GWA1_ZB2_49_26 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
Tax=BJP_IG2069_Desfulfarculales_53_13
13_2_20cm_scaffold_317_4
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(3023..4678)
DNA (1656bp) protein (552aa)
hypothetical protein Tax=RBG_13_Nitrospirae_39_12_curated
Putative uncharacterized protein id=4361891 bin=GWF2_Lentisphaerae_57_35 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
13_2_20cm_scaffold_317_5
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

Not on your lists

comp(4728..6593)
DNA (1866bp) protein (622aa)
asparagine synthase (EC:6.3.5.4); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] Tax=RIFOXYB2_FULL_RIF07_49_35_curated
asparagine synthase (EC:6.3.5.4)
hypothetical protein n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI000371E980 rbh
13_2_20cm_scaffold_317_6
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(6683..7927)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000379E53B rbh
hypothetical protein Tax=RBG_13_Caldithrix_44_9_curated
putative delta-aminolevulinic acid dehydratase
13_2_20cm_scaffold_317_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7957..8886)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036772E3 rbh
family 2 glycosyl transferase Tax=RBG_16_Deltaproteobacteria_64_85_curated
family 2 glycosyl transferase
13_2_20cm_scaffold_317_8
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

Not on your lists

comp(8897..9562)
DNA (666bp) protein (222aa)
Glycosyltransferase n=1 Tax=Desulfovibrio africanus PCS RepID=M5PRW7_DESAF
Group 1 glycosyl transferase {ECO:0000313|EMBL:KJJ85938.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
group 1 glycosyl transferase
13_2_20cm_scaffold_317_9
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

Not on your lists

comp(9562..10101)
DNA (540bp) protein (180aa)
Glycosyl transferase group 1 n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YUQ8_DESAF
Group 1 glycosyl transferase {ECO:0000313|EMBL:KJJ85938.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
group 1 glycosyl transferase
13_2_20cm_scaffold_317_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10199..11131)
DNA (933bp) protein (311aa)
Glycosyl transferase group 1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD20_9BACT
Glycosyl transferase group 1 {ECO:0000313|EMBL:EEF62366.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source=
hypothetical protein
13_2_20cm_scaffold_317_11
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11169..11951)
DNA (783bp) protein (261aa)
UDP-glucose/GDP-mannose dehydrogenase dimerization Tax=RifOxyA12_full_Proteobacteria_58_15_curated
UDP-glucose/GDP-mannose dehydrogenase
UDP-glucose/GDP-mannose dehydrogenase id=5241154 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
13_2_20cm_scaffold_317_12
RLO_PLX_64_10, Bacteria

Not on your lists

comp(12182..12979)
DNA (798bp) protein (266aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Putative uncharacterized protein id=3968024 bin=GWC2_Methylomirabilis_70_24 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_scaffold_317_13
unknown

Not on your lists

13313..13768
DNA (456bp) protein (152aa)

This feature has no annotations

13_2_20cm_scaffold_317_14
unknown

Not on your lists

13728..14366
DNA (639bp) protein (213aa)

This feature has no annotations

13_2_20cm_scaffold_317_15
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(14422..15069)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000368B15B
hexapaptide repeat-containing transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hexapaptide repeat-containing transferase
13_2_20cm_scaffold_317_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(15118..15495)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEX1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41780.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_317_17
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(15672..16163)
DNA (492bp) protein (164aa)
Transcriptional activator RfaH id=4824351 bin=GWA2_OP3_52_12 species=gamma proteobacterium IMCC3088 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
transcriptional activator RfaH; K05785 transcriptional antiterminator RfaH Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
nusg antitermination factor
13_2_20cm_scaffold_317_18
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(16326..16637)
DNA (312bp) protein (104aa)
putative undecaprenyl-phosphate galactose phosphotransferase RfbP (fragment) (EC:2.7.8.6)
Putative Undecaprenyl-phosphate galactose phosphotransferase RfbP {ECO:0000313|EMBL:CBK42595.1}; EC=2.7.8.6 {ECO:0000313|EMBL:CBK42595.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales;
Putative Undecaprenyl-phosphate galactose phosphotransferase RfbP n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH58_9BACT
13_2_20cm_scaffold_317_19
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(16657..18945)
DNA (2289bp) protein (763aa)
Putative Lipopolysaccharide biosynthesis protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH59_9BACT rbh
putative lipopolysaccharide biosynthesis protein
Putative Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:CBK42596.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira
13_2_20cm_scaffold_317_20
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(18942..20378)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH60_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42597.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_317_21
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(20431..21012)
DNA (582bp) protein (194aa)
Putative Polysaccharide export protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH61_9BACT
putative polysaccharide export protein; K01991 polysaccharide export outer membrane protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
putative polysaccharide export protein
13_2_20cm_scaffold_317_22
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(21285..21992)
DNA (708bp) protein (236aa)
Putative Polysaccharide export protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH62_9BACT
putative polysaccharide export protein
Putative Polysaccharide export protein {ECO:0000313|EMBL:CBK42599.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;
13_2_20cm_scaffold_317_23
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(22192..22587)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH63_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hypothetical protein
13_2_20cm_scaffold_317_24
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

22993..23682
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH64_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42601.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_317_25
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(23693..24052)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH63_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hypothetical protein
13_2_20cm_scaffold_317_26
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

24535..25161
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH64_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42601.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_317_27
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(25186..25662)
DNA (477bp) protein (159aa)
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
13_2_20cm_scaffold_317_28
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(26135..28021)
DNA (1887bp) protein (629aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.3)
Putative Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CBK42823.1}; EC=1.3.99.3 {ECO:0000313|EMBL:CBK42823.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" sou
Putative Acyl-CoA dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHT6_9BACT rbh
13_2_20cm_scaffold_317_29
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(28026..29372)
DNA (1347bp) protein (449aa)
tryptophanase (EC:4.1.99.1)
Aromatic amino acid beta-eliminating lyase/threonine aldolase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWV6_9BACT rbh
Aromatic amino acid beta-eliminating lyase/threonine aldolase {ECO:0000313|EMBL:EHO43082.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
13_2_20cm_scaffold_317_30
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(29385..30332)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHQ8_9BACT rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42795.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Displaying items 1-30 of 44 in total

View Taxonomy