ggKbase home page

13_2_20cm_scaffold_3183

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3183_1
unknown

Not on your lists

1..96
DNA (96bp) protein (32aa)

This feature has no annotations

13_2_20cm_scaffold_3183_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

158..1141
DNA (984bp) protein (328aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein id=2306537 bin=GWA2_Methylomirabilis_73_35 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aldo/keto reductase Tax=GWA2_Rokubacteria_73_35_curated
aldo/keto reductase
13_2_20cm_scaffold_3183_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1170..1442)
DNA (273bp) protein (91aa)
Putative uncharacterized protein id=3858503 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_2_20cm_scaffold_3183_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1457..2080)
DNA (624bp) protein (208aa)
Epoxide hydrolase N-terminal domain-like phosphatase (EC:3.3.2.10)
HAD-superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Epoxide hydrolase N-terminal domain-like phosphatase id=2432284 bin=GWA2_Methylomirabilis_73_35 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3183_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2131..2352
DNA (222bp) protein (74aa)
Putative uncharacterized protein id=4793436 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_2_20cm_scaffold_3183_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2391..2696
DNA (306bp) protein (102aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fructose-2,6-bisphosphatase id=3162220 bin=GWC2_Methylomirabilis_70_16 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fructose-2,6-bisphosphatase
13_2_20cm_scaffold_3183_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2693..3253
DNA (561bp) protein (187aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3162219 bin=GWC2_Methylomirabilis_70_16 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_3183_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3234..3941
DNA (708bp) protein (236aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3162218 bin=GWC2_Methylomirabilis_70_16 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_3183_9
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3949..4347)
DNA (399bp) protein (133aa)
Two component transcriptional regulator, winged helix family id=1871382 bin=GWB2_Proteobacteria_55_19 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=GWB2_Deltaproteobacteria_55_19_curated
winged helix family two component transcriptional regulator
13_2_20cm_scaffold_3183_10
R_RIF_OD1_09_50_20, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(4663..5757)
DNA (1095bp) protein (365aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_09_50_20_curated
Putative uncharacterized protein id=2836931 bin=GWF2_CPR3_35_18 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_CPR3_35_18 organism_group=CPR3 rbh
hypothetical protein
13_2_20cm_scaffold_3183_11
unknown

Not on your lists

comp(5754..5978)
DNA (225bp) protein (75aa)

This feature has no annotations

13_2_20cm_scaffold_3183_12
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6164..6427
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F70FB
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:AEI80181.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus
13_2_20cm_scaffold_3183_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7283..9127
DNA (1845bp) protein (615aa)
putative Efflux transporter, RND family, MFP subunit; K02005 HlyD family secretion protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Efflux transporter, RND family, MFP subunit id=2720744 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Efflux transporter, RND family, MFP subunit
13_2_20cm_scaffold_3183_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9143..9889
DNA (747bp) protein (249aa)
ybbA; transporter subunit: ATP-binding component of ABC superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ybbA; transporter subunit: ATP-binding component of ABC superfamily id=14627303 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ABC transporter ATP-binding protein
13_2_20cm_scaffold_3183_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10044..10631
DNA (588bp) protein (196aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14627304 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_3183_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10634..11011
DNA (378bp) protein (126aa)
hypothetical protein id=14627304 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
export ABC transporter permease
13_2_20cm_scaffold_3183_17
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

11054..12367
DNA (1314bp) protein (438aa)
Myo-inositol-1-phosphate synthase (EC:5.5.1.4); K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Myo-inositol-1-phosphate synthase (EC:5.5.1.4)
Myo-inositol-1-phosphate synthase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGU2_CHLTF
13_2_20cm_scaffold_3183_18
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12360..13631
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003640750
Putative glycosyl transferase {ECO:0000313|EMBL:EHR72776.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
13_2_20cm_scaffold_3183_19
unknown

Not on your lists

14329..14685
DNA (357bp) protein (119aa)

This feature has no annotations

13_2_20cm_scaffold_3183_20
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14701..16149
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00037AB1AE
Uncharacterized protein {ECO:0000313|EMBL:KIX18774.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361
protein kinase-like protein
13_2_20cm_scaffold_3183_21
unknown

Not on your lists

16477..16869
DNA (393bp) protein (131aa)

This feature has no annotations

Displaying 21 items

View Taxonomy