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13_2_20cm_scaffold_3401

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3401_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1..297
DNA (297bp) protein (99aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=861299 species="Bacteria; Gemmatimonad
Riboflavin biosynthesis protein RibF n=2 Tax=Rhodothermus marinus RepID=D0MI94_RHOM4
riboflavin biosynthesis protein RibF
13_2_20cm_scaffold_3401_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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297..1925
DNA (1629bp) protein (543aa)
Protein translocase subunit SecD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECD_GEMAT
secD; protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
SecD export membrane protein
13_2_20cm_scaffold_3401_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1925..2953
DNA (1029bp) protein (343aa)
Protein translocase subunit SecF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECF_GEMAT rbh
SecF protein
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_3401_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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3007..3726
DNA (720bp) protein (240aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Hydrolase, TatD family n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2H5_9BACT
hydrolase, TatD family
13_2_20cm_scaffold_3401_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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3723..5792
DNA (2070bp) protein (690aa)
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE57_GEMAT
13_2_20cm_scaffold_3401_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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5900..6181
DNA (282bp) protein (94aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_2_20cm_scaffold_3401_7
unknown

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6252..6599
DNA (348bp) protein (116aa)

This feature has no annotations

13_2_20cm_scaffold_3401_8
unknown

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6693..7037
DNA (345bp) protein (115aa)

This feature has no annotations

13_2_20cm_scaffold_3401_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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7226..8011
DNA (786bp) protein (262aa)
Diacylglycerol kinase, catalytic region n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TXD5_ALKMQ
diacylglycerol kinase catalytic subunit; K07029 Tax=GWC2_Gemmatimonadetes_71_10_curated
diacylglycerol kinase catalytic subunit
13_2_20cm_scaffold_3401_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7960..8493
DNA (534bp) protein (178aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_scaffold_3401_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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8490..9290
DNA (801bp) protein (267aa)
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamate racemase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E7X2_GEOLS
Glutamate racemase
13_2_20cm_scaffold_3401_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(9262..10026)
DNA (765bp) protein (255aa)
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-); K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] Tax=RBG_16_Gemmatimonadetes_66_8_curated
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] id=24407690 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Calcineurin-like phosphoesterase superfamily domain protein
13_2_20cm_scaffold_3401_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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10080..11264
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P851_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_2_20cm_scaffold_3401_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11296..12297
DNA (1002bp) protein (334aa)
Deoxyribose-phosphate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9C7_GEMAT
deoxyribose-phosphate aldolase
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:AHG90560.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_3401_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12297..14591
DNA (2295bp) protein (765aa)
Putative aldehyde dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9C6_GEMAT
Aldehyde Dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:AHG90561.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_3401_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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14599..15015
DNA (417bp) protein (139aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0003127485
hypothetical protein
13_2_20cm_scaffold_3401_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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15339..16946
DNA (1608bp) protein (536aa)
Peptidyl-prolyl cis-trans isomerase ppiA n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=J2AET0_9DELT id=5224324 bin=16ft_combo_ws3_JS1 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cyclophilin type peptidyl-prolyl cis-trans isomerase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cyclophilin type peptidyl-prolyl cis-trans isomerase
13_2_20cm_scaffold_3401_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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16943..17692
DNA (750bp) protein (250aa)
WD40 domain protein beta Propeller Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
WD40 domain protein beta propeller id=2361676 bin=GWA2_Ignavibacteriae_54_16_partial species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
WD40 domain protein beta Propeller
Displaying 18 items

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