ggKbase home page

13_2_20cm_scaffold_341

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_341_1
Halostagnicola sp. A56, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2..502
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-B05 RepID=UPI00037A560B
Mechanosensitive ion channel protein {ECO:0000313|EMBL:KDE60606.1}; TaxID=1495067 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola s
hypothetical protein
13_2_20cm_scaffold_341_2
Thermofilum sp. 1910b, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

581..2050
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5ZWY7_9CREN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGT35764.1}; TaxID=1365176 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum sp. 1910b.;"
13_2_20cm_scaffold_341_3
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2490..2909
DNA (420bp) protein (140aa)
hypothetical protein id=14624194 bin=bin5_DeltaP species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein Tax=CSP1_8_Deltaproteobacteria
hypothetical protein
13_2_20cm_scaffold_341_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2964..4547)
DNA (1584bp) protein (528aa)
mut; methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:AFU59425.1}; EC=5.4.99.2 {ECO:0000313|EMBL:AFU59425.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; N
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHK0_NITGG rbh
13_2_20cm_scaffold_341_5
Pyrococcus furiosus, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(4540..5496)
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Pyrococcus furiosus RepID=I6TYW0_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAL82071.1}; TaxID=186497 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus furiosus (strain ATC
13_2_20cm_scaffold_341_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

5615..7363
DNA (1749bp) protein (583aa)
methylmalonyl-CoA mutase, alpha subunit; K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RBG_16_Archaea_50_20_curated
Probable methylmalonyl-CoA mutase, alpha subunit, N-terminus n=1 Tax=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) RepID=Q9HKY1_THEAC rbh
methylmalonyl-CoA mutase subunit alpha
13_2_20cm_scaffold_341_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

7512..7961
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Streptomyces sp. 351MFTsu5.1 RepID=UPI000373DAF8
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
acetyltransferase
13_2_20cm_scaffold_341_8

Not on your lists

8000..8566
DNA (567bp) protein (189aa)
NUDIX hydrolase n=1 Tax=Thauera sp. 27 RepID=N6XSZ2_9RHOO
Marine sediment metagenome DNA, contig: S06H3_C01417 {ECO:0000313|EMBL:GAH95952.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
NUDIX hydrolase
13_2_20cm_scaffold_341_9
unknown

Not on your lists

comp(8753..9373)
DNA (621bp) protein (207aa)

This feature has no annotations

13_2_20cm_scaffold_341_10
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(9577..10071)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF48_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82318.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
13_2_20cm_scaffold_341_11
unknown

Not on your lists

10418..10912
DNA (495bp) protein (165aa)

This feature has no annotations

13_2_20cm_scaffold_341_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(12545..12895)
DNA (351bp) protein (117aa)
Lactoylglutathione lyase-like protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AM16_IGNAJ
Marine sediment metagenome DNA, contig: S03H2_C02230 Tax=RBG_16_Archaea_50_20_curated
Lactoylglutathione lyase-like protein
13_2_20cm_scaffold_341_13
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

comp(12978..13898)
DNA (921bp) protein (307aa)
purine nucleosidase (EC:3.2.2.1)
Purine nucleosidase {ECO:0000313|EMBL:BAJ48099.1}; EC=3.2.2.1 {ECO:0000313|EMBL:BAJ48099.1};; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" so
Purine nucleosidase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N730_9ARCH
13_2_20cm_scaffold_341_14
Metallosphaera yellowstonensis, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(13942..14643)
DNA (702bp) protein (234aa)
Nicotinamidase-like amidase n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C2B2_9CREN
Nicotinamidase-like amidase {ECO:0000313|EMBL:EHP70383.1}; Flags: Precursor;; TaxID=671065 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Metallosphaera.;" source="Metallo
isochorismatase hydrolase
13_2_20cm_scaffold_341_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14663..15889
DNA (1227bp) protein (409aa)
putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-) Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
monooxygenase n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B19E
FAD-dependent oxidoreductase
13_2_20cm_scaffold_341_16
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(15886..17151)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035C941A
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_2_20cm_scaffold_341_17
unknown

Not on your lists

comp(17317..17760)
DNA (444bp) protein (148aa)

This feature has no annotations

13_2_20cm_scaffold_341_18
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(17873..18415)
DNA (543bp) protein (181aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate is
3-isopropylmalate dehydratase small subunit n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8A985_IGNH4
3-isopropylmalate dehydratase small subunit
13_2_20cm_scaffold_341_19
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(18412..19689)
DNA (1278bp) protein (426aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate is
3-isopropylmalate dehydratase large subunit n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8AB09_IGNH4
3-isopropylmalate dehydratase large subunit
13_2_20cm_scaffold_341_20
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(20079..21146)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00035F6989
Uncharacterized protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_2_20cm_scaffold_341_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

21257..21706
DNA (450bp) protein (150aa)
methylmalonyl-CoA mutase, small subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, small subunit {ECO:0000313|EMBL:AFU59422.1}; EC=5.4.99.2 {ECO:0000313|EMBL:AFU59422.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; N
Methylmalonyl-CoA mutase, small subunit n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILC3_NITGG
13_2_20cm_scaffold_341_22
unknown

Not on your lists

21740..22159
DNA (420bp) protein (140aa)

This feature has no annotations

13_2_20cm_scaffold_341_23
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

Not on your lists

22244..23125
DNA (882bp) protein (294aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] Tax=RBG_16_Bathyarchaeota_57_9_curated
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3C9_METSW
13_2_20cm_scaffold_341_24
unknown

Not on your lists

23542..24006
DNA (465bp) protein (155aa)

This feature has no annotations

13_2_20cm_scaffold_341_25
unknown

Not on your lists

comp(24028..24546)
DNA (519bp) protein (173aa)

This feature has no annotations

13_2_20cm_scaffold_341_26
Vulcanisaeta distributa, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

24808..26190
DNA (1383bp) protein (461aa)
carboxypeptidase Taq (EC:3.4.17.19)
Carboxypeptidase Taq {ECO:0000313|EMBL:ADN50223.1}; EC=3.4.17.19 {ECO:0000313|EMBL:ADN50223.1};; TaxID=572478 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanis
Carboxypeptidase Taq n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QP52_VULDI
13_2_20cm_scaffold_341_27
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(26197..26898)
DNA (702bp) protein (234aa)
N-acetyltransferase n=2 Tax=Chloroflexus RepID=A9WHF1_CHLAA
N-acetyltransferase
N-acetyltransferase {ECO:0000313|EMBL:ABY35663.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aur
13_2_20cm_scaffold_341_28
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(27048..28010)
DNA (963bp) protein (321aa)
nadA; quinolinate synthase A (EC:2.5.1.72) id=14426445 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP rbh
nadA; quinolinate synthase A (EC:2.5.1.72) Tax=CSP1_2_Dadabacteria
quinolinate synthetase (EC:2.5.1.72)
13_2_20cm_scaffold_341_29
unknown

Not on your lists

comp(27971..28198)
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying 29 items

View Taxonomy