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13_2_20cm_scaffold_3703

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3703_1
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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77..544
DNA (468bp) protein (156aa)
Biopolymer transport protein n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E0E8_METI4
exbD; biopolymer transport protein
Biopolymer transport protein {ECO:0000313|EMBL:ACD84377.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.
13_2_20cm_scaffold_3703_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(541..1137)
DNA (597bp) protein (199aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T3_9BACT
rdgB; non-canonical purine NTP pyrophosphatase
13_2_20cm_scaffold_3703_3
Akkermansia muciniphila, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1177..2703
DNA (1527bp) protein (509aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=349741 species="Bacteria; Verruco
leucyl-tRNA synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B77
leucyl-tRNA synthetase
13_2_20cm_scaffold_3703_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2703..3695
DNA (993bp) protein (331aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=497964 species="Bacteria; Verruco
Leucine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T4_9BACT
Suspect SCG annotation. See neighboring gene [13_2_20cm_scaffold_3703_3].
leucyl-tRNA synthetase
13_2_20cm_scaffold_3703_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3692..4159
DNA (468bp) protein (156aa)
Large-conductance mechanosensitive channel n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=MSCL_SYNAS
Large-conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS7
13_2_20cm_scaffold_3703_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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4290..4808
DNA (519bp) protein (173aa)
3D domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF5_9BACT
3D domain protein {ECO:0000313|EMBL:EDY20119.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3D domain-containing protein
13_2_20cm_scaffold_3703_7
unknown

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comp(4665..5057)
DNA (393bp) protein (131aa)

This feature has no annotations

13_2_20cm_scaffold_3703_8
unknown

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comp(5334..5534)
DNA (201bp) protein (67aa)

This feature has no annotations

13_2_20cm_scaffold_3703_9
unknown

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6274..6543
DNA (270bp) protein (90aa)

This feature has no annotations

13_2_20cm_scaffold_3703_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(6864..7412)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3S5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18905.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_2_20cm_scaffold_3703_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(7475..8890)
DNA (1416bp) protein (472aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
MiaB family RNA modification protein (EC:1.3.1.74)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3P9_9BACT rbh
13_2_20cm_scaffold_3703_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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8995..9876
DNA (882bp) protein (294aa)
S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.28 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID
5'-methylthioadenosine phosphorylase (EC:2.4.2.28)
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZS2_9BACT
13_2_20cm_scaffold_3703_13
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9980..10384
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZK88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCQ95027.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
glyoxalase
13_2_20cm_scaffold_3703_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10451..10978
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347CEA7
Protein of unknown function DUF2127
Uncharacterized protein {ECO:0000313|EMBL:AHG93868.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_3703_15
unknown

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11065..11328
DNA (264bp) protein (88aa)

This feature has no annotations

13_2_20cm_scaffold_3703_16
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(11379..12278)
DNA (900bp) protein (300aa)
Peptidase families S8 and S53 subfamily n=2 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9V0M1_9ACTO
Peptidase S8 {ECO:0000313|EMBL:KJR12848.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
response regulator receiver protein
Displaying 16 items

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