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13_2_20cm_scaffold_4030

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_4030_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..381)
DNA (381bp) protein (127aa)
muconate and chloromuconate cycloisomerase; K01856 muconate cycloisomerase [EC:5.5.1.1] Tax=GWA2_Rokubacteria_70_23_curated
tcbD; chloromuconate cycloisomerase (EC:5.5.1.7)
Muconate and chloromuconate cycloisomerase id=3080367 bin=GWC2_Methylomirabilis_70_24 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_4030_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(386..1546)
DNA (1161bp) protein (387aa)
FAD dependent oxidoreductase; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1] Tax=GWA2_Rokubacteria_70_23_curated
FAD dependent oxidoreductase id=3080366 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
FAD dependent oxidoreductase
13_2_20cm_scaffold_4030_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1617..1982)
DNA (366bp) protein (122aa)
mutT; mutator protein MutT (EC:3.6.1.-); K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mutT; mutator protein MutT (EC:3.6.1.-)
Mutator MutT protein id=4996876 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4030_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1996..2655)
DNA (660bp) protein (220aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-); K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] id=14627033 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_4030_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2697..3677
DNA (981bp) protein (327aa)
glycine cleavage system t protein (EC:2.1.2.10); K06980 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4996873 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
folate-binding protein YgfZ
13_2_20cm_scaffold_4030_6
Streptomyces sp. HCCB10043, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3956..5374)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HCCB10043 RepID=V6ULF7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ESU51522.1}; TaxID=1396518 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HCCB10043.;"
13_2_20cm_scaffold_4030_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5616..6320
DNA (705bp) protein (235aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14624745 bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
13_2_20cm_scaffold_4030_8
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6566..6931)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDA7_9BRAD
hypothetical protein Tax=RBG_13_Deltaproteobacteria_43_22_curated
putative short-chain dehydrogenase
13_2_20cm_scaffold_4030_9
unknown

Not on your lists

comp(7367..7531)
DNA (165bp) protein (55aa)

This feature has no annotations

13_2_20cm_scaffold_4030_10
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7610..8023)
DNA (414bp) protein (138aa)
Mll6572 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q988W0_RHILO
hypothetical protein
Mll6572 protein {ECO:0000313|EMBL:BAB52837.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAF
13_2_20cm_scaffold_4030_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8219..8812
DNA (594bp) protein (198aa)
id=24403804 Tax=RBG_16_RIF_WS3X_71_46_curated
id=24403804 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_2_20cm_scaffold_4030_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8809..9636
DNA (828bp) protein (276aa)
peptidase M50 id=24403803 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase M50 Tax=RBG_16_RIF_WS3X_71_46_curated
peptidase M50
13_2_20cm_scaffold_4030_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9674..11623
DNA (1950bp) protein (650aa)
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase id=4426329 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
13_2_20cm_scaffold_4030_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11631..12953
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Bacillus sp. L1(2012) RepID=UPI000347F473
Uncharacterized protein {ECO:0000313|EMBL:ETX01083.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
rieske (2Fe-2S) domain-containing protein
13_2_20cm_scaffold_4030_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13128..13274
DNA (147bp) protein (49aa)
thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiamine biosynthesis protein ThiS id=4426339 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. S9 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4030_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13293..14072
DNA (780bp) protein (260aa)
thiG; thiazole synthase; K03149 thiamine biosynthesis ThiG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiazole synthase id=5006704 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiG; thiazole synthase
13_2_20cm_scaffold_4030_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14149..14628
DNA (480bp) protein (160aa)
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase id=5006705 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4030_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14625..15728
DNA (1104bp) protein (368aa)
glycine oxidase; K03153 glycine oxidase [EC:1.4.3.19] Tax=GWA2_Rokubacteria_70_23_curated
Putative glycine oxidase id=4584627 bin=GWF2_Methylomirabilis_70_14 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine oxidase ThiO
13_2_20cm_scaffold_4030_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15738..16031
DNA (294bp) protein (98aa)
Uncharacterized protein id=4549686 bin=GWC2_Methylomirabilis_70_24 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Uncharacterized protein Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_4030_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16028..16162
DNA (135bp) protein (45aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 20 items

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