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13_2_20cm_scaffold_414

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_414_1
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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451..1398
DNA (948bp) protein (316aa)
O-methyltransferase, family 3 n=1 Tax=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) RepID=Q2RMN0_RHORT
hypothetical protein
O-methyltransferase, family 3 {ECO:0000313|EMBL:ABC24615.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodosp
13_2_20cm_scaffold_414_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1420..2283)
DNA (864bp) protein (288aa)
rhomboid family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rhomboid family protein id=14431019 bin=bin3_NC10 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin3_NC10 organism_group=NC10
protease
13_2_20cm_scaffold_414_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2590..5106
DNA (2517bp) protein (839aa)
potassium transporter Tax=GWA2_Rokubacteria_70_23_curated
K(+)-insensitive pyrophosphate-energized proton pump id=3585892 bin=GWF2_Methylomirabilis_70_14 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
potassium transporter
13_2_20cm_scaffold_414_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

5114..5740
DNA (627bp) protein (209aa)
Protein dedA (Protein DSG-1) id=3212379 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dedA; protein dedA (Protein DSG-1) Tax=GWC2_Rokubacteria_70_16_curated
dedA; protein dedA (Protein DSG-1)
13_2_20cm_scaffold_414_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6015..6503
DNA (489bp) protein (163aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Lipid A biosynthesis acyltransferase id=5027500 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipid A biosynthesis acyltransferase
13_2_20cm_scaffold_414_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6500..7171
DNA (672bp) protein (224aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=5027499 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_414_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7183..7602)
DNA (420bp) protein (140aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627385 bin=bin7_NC10_sister species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_414_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7819..8922
DNA (1104bp) protein (368aa)
soluble lytic murein transglycosylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Soluble lytic murein transglycosylase id=5027497 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lytic transglycosylase, SLT, LysM and LysM domain-containing
13_2_20cm_scaffold_414_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8906..9082
DNA (177bp) protein (59aa)
soluble lytic murein transglycosylase Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_414_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9267..9650)
DNA (384bp) protein (128aa)
ribonuclease BN; K07058 membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease BN id=5027495 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease BN
13_2_20cm_scaffold_414_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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10326..10787
DNA (462bp) protein (154aa)
hypothetical protein id=14627381 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_414_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10765..11250
DNA (486bp) protein (162aa)
id=2650396 Tax=GWA2_Rokubacteria_73_35_curated
id=2650396 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_414_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11247..11537
DNA (291bp) protein (97aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3372626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_414_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11527..12399
DNA (873bp) protein (291aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-seryl-tRNA(Sec) selenium transferase id=3372624 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
selA; selenocysteine synthase
13_2_20cm_scaffold_414_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12383..12877
DNA (495bp) protein (165aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-seryl-tRNA selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase id=3372624 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_414_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12969..14882
DNA (1914bp) protein (638aa)
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor id=14627377 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
selenocysteine-specific translation elongation factor (EC:2.7.7.4)
13_2_20cm_scaffold_414_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14922..15104
DNA (183bp) protein (61aa)
hypothetical protein; K03116 sec-independent protein translocase protein TatA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=3372620 bin=GWA2_Methylomirabilis_73_35 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_414_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15121..16755
DNA (1635bp) protein (545aa)
Putative uncharacterized protein id=3372618 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase
13_2_20cm_scaffold_414_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16733..18205
DNA (1473bp) protein (491aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3372616 bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_414_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18302..18910
DNA (609bp) protein (203aa)
Uncharacterized protein id=3372452 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_414_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18934..21756
DNA (2823bp) protein (941aa)
ileS; isoleucine tRNA synthetase (EC:6.1.1.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ileS; isoleucine tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase id=4006793 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_414_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21753..22238
DNA (486bp) protein (162aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase id=4006792 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_414_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22235..23164
DNA (930bp) protein (310aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pseudouridine synthase id=4608907 bin=GWC2_Methylomirabilis_70_24 species=Sporolactobacillus inulinus genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
pseudouridine synthase
13_2_20cm_scaffold_414_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23248..24624
DNA (1377bp) protein (459aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase id=4608909 bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
13_2_20cm_scaffold_414_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24627..26468
DNA (1842bp) protein (614aa)
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=4783126 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_414_26
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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26573..26842
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JAI3_ANAD2
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein
13_2_20cm_scaffold_414_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26856..29027
DNA (2172bp) protein (724aa)
uvrD; DNA helicase II (EC:3.6.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uvrD; DNA helicase II (EC:3.6.1.-) id=14627418 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
uvrD; DNA helicase II (EC:3.6.1.-)
13_2_20cm_scaffold_414_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

29027..29314
DNA (288bp) protein (96aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) id=14627416 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
13_2_20cm_scaffold_414_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

29304..30779
DNA (1476bp) protein (492aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=2650598 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_414_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

30776..32029
DNA (1254bp) protein (418aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) id=14627414 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-)
Displaying 30 items

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