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13_2_20cm_scaffold_4556

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_4556_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1..858
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A15F0
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_scaffold_4556_2
unknown

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855..1136
DNA (282bp) protein (94aa)

This feature has no annotations

13_2_20cm_scaffold_4556_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1148..2461)
DNA (1314bp) protein (438aa)
Peptidase M20 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ0_KORVE
peptidase M20 Tax=GWC2_Gemmatimonadetes_71_10_curated
peptidase M20
13_2_20cm_scaffold_4556_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2553..3470)
DNA (918bp) protein (306aa)
Zn-dependent hydrolase of the beta-lactamase fold n=1 Tax=Marinobacter adhaerens (strain HP15) RepID=E4PLJ6_MARAH
Zn-dependent hydrolase
Zn-dependent hydrolase {ECO:0000313|EMBL:AHG88047.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_4556_5
unknown

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comp(3578..5008)
DNA (1431bp) protein (477aa)

This feature has no annotations

13_2_20cm_scaffold_4556_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5126..5686
DNA (561bp) protein (187aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA74_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_4556_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5679..6176
DNA (498bp) protein (166aa)
putative glycosyl hydrolase, family 13 (EC:2.4.1.-)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Glycoside hydrolase family 13 domain protein id=2545611 bin=GWB1_Spirochaetes_59_5 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
13_2_20cm_scaffold_4556_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6176..6778
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA76_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92076.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_4556_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6741..7922
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA77_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92075.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_4556_10
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7919..9127)
DNA (1209bp) protein (403aa)
Major facilitator superfamily protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0C6A1_9EURY rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:ELZ17449.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena li
major facilitator superfamily protein
13_2_20cm_scaffold_4556_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(9124..9879)
DNA (756bp) protein (252aa)
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVR2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_2_20cm_scaffold_4556_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10002..10436)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Cardinium endosymbiont cEper1 of Encarsia pergandiella RepID=K0P9E2_9BACT
Integral membrane protein CcmA involved in cell shape determination Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_scaffold_4556_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10436..11260)
DNA (825bp) protein (275aa)
Peptidase M23 n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VVK0_THESW
Cell wall endopeptidase, family M23/M37 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M23
13_2_20cm_scaffold_4556_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11257..12141)
DNA (885bp) protein (295aa)
Chromosome partitioning protein ParB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J2_GEMAT
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=GWC2_Gemmatimonadetes_71_10_curated
parB-like partition protein
13_2_20cm_scaffold_4556_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(12138..12965)
DNA (828bp) protein (276aa)
Chromosome (Plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U1V2_9DELT
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cobyrinic acid ac-diamide synthase
13_2_20cm_scaffold_4556_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13254..14927)
DNA (1674bp) protein (558aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J5_GEMAT
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RBG_16_Gemmatimonadetes_66_8_curated
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
13_2_20cm_scaffold_4556_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15486..16622)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344BF53
hypothetical membrane protein; K01992 ABC-2 type transport system permease protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical membrane protein
13_2_20cm_scaffold_4556_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16580..17656)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDA7F
putative ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
ABC transporter related protein
13_2_20cm_scaffold_4556_19
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17688..18914)
DNA (1227bp) protein (409aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1395587 species="Bacteria; Firmic
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00037CFF17
cysteine desulfurase
13_2_20cm_scaffold_4556_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18937..19308)
DNA (372bp) protein (124aa)
hypothetical protein id=14632749 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
hypothetical protein
13_2_20cm_scaffold_4556_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19305..20609)
DNA (1305bp) protein (435aa)
Iron-regulated ABC transporter permease protein SufD Tax=GWC2_Gemmatimonadetes_71_10_curated
SufD, needed for fhuF Fe-S center production/stability id=2101211 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
FeS assembly protein SufD
13_2_20cm_scaffold_4556_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(20612..21385)
DNA (774bp) protein (258aa)
Iron-regulated ABC transporter ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
FeS assembly ATPase SufC id=2754156 bin=GWA2_Ignavibacteria_55_11 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Iron-sulfur cluster assembly ATPase protein SufC
13_2_20cm_scaffold_4556_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21382..22815)
DNA (1434bp) protein (478aa)
Iron-regulated ABC transporter membrane component SufB n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ETI0_9BACT
Fe-S cluster assembly protein SufB Tax=RBG_16_Gemmatimonadetes_66_8_curated
Iron-regulated ABC transporter membrane component SufB
13_2_20cm_scaffold_4556_24
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(22924..23535)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWF6_9BACT
uncharacterized MobA-like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
13_2_20cm_scaffold_4556_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

23595..24140
DNA (546bp) protein (182aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Peptide deformylase id=4811764 bin=GWC2_Ignavibacteria_56_12 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
formylmethionine deformylase
13_2_20cm_scaffold_4556_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

24485..25537
DNA (1053bp) protein (351aa)
Phosphomethylpyrimidine synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EXI3_SORC5
thiC; thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC Tax=GWC2_Gemmatimonadetes_71_10_curated
thiC; thiamin biosynthesis protein
13_2_20cm_scaffold_4556_27
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25534..26193)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XTW0_SORCE
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
hypothetical protein
13_2_20cm_scaffold_4556_28
Mycobacterium hassiacum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26181..26573)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Actinopolyspora mortivallis RepID=UPI00035D3021
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EKF25598.1}; TaxID=1122247 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium
transcriptional regulator
13_2_20cm_scaffold_4556_29
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

26746..27018
DNA (273bp) protein (91aa)
Ferredoxin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC37_GEMAT
ferredoxin Tax=GWC2_Gemmatimonadetes_71_10_curated
4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein
13_2_20cm_scaffold_4556_30
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(27015..27881)
DNA (867bp) protein (289aa)
putative 3-oxoadipate enol-lactonase (EC:3.1.1.24) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative hydrolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC35_GEMAT
putative hydrolase
Displaying 30 items

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