ggKbase home page

13_2_20cm_scaffold_5988

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_5988_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..152)
DNA (150bp) protein (50aa)
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=3830373 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_5988_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(152..1372)
DNA (1221bp) protein (407aa)
serine--pyruvate transaminase (EC:2.6.1.51) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
serine--pyruvate transaminase (EC:2.6.1.51)
Serine--pyruvate transaminase id=3830371 bin=GWA2_Methylomirabilis_73_35 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_5988_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1440..1883)
DNA (444bp) protein (148aa)
Lipid A biosynthesis domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPQ0_9BACT
Lipid A biosynthesis domain protein {ECO:0000313|EMBL:EEF58173.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;"
membrane protein
13_2_20cm_scaffold_5988_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1909..2265)
DNA (357bp) protein (119aa)
transcriptional regulator y4dJ Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_2_20cm_scaffold_5988_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2296..2520)
DNA (225bp) protein (75aa)
anti-ECFsigma factor, ChrR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Allophanate hydrolase id=3830286 bin=GWA2_Methylomirabilis_73_35 species=Salinisphaera shabanensis genus=Salinisphaera taxon_order=Salinisphaerales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
anti-ECFsigma factor, ChrR
13_2_20cm_scaffold_5988_6
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

comp(2558..2866)
DNA (309bp) protein (103aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein id=4819262 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Rieske (2Fe-2S) domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
13_2_20cm_scaffold_5988_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2866..3264)
DNA (399bp) protein (133aa)
DSBA-like thioredoxin domain-containing protein Tax=GWA2_Rokubacteria_70_23_curated
DSBA-like thioredoxin domain-containing protein id=3830987 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DsbA oxidoreductase
13_2_20cm_scaffold_5988_8
unknown

Not on your lists

comp(3301..3522)
DNA (222bp) protein (74aa)

This feature has no annotations

13_2_20cm_scaffold_5988_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3523..3984
DNA (462bp) protein (154aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DoxX family protein id=3830283 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_5988_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

3992..4375
DNA (384bp) protein (128aa)
hypothetical protein id=14625221 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_5988_11
unknown

Not on your lists

4421..4915
DNA (495bp) protein (165aa)

This feature has no annotations

13_2_20cm_scaffold_5988_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4974..5657)
DNA (684bp) protein (228aa)
hypothetical protein id=14627875 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_5988_13
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

5768..6412
DNA (645bp) protein (215aa)
hypothetical protein; K07147 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Molybdopterin binding protein id=4181315 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_5988_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6412..7173
DNA (762bp) protein (254aa)
Enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carnitinyl-CoA dehydratase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08XE2_STIAD
cytochrome p450 family protein
13_2_20cm_scaffold_5988_15
unknown

Not on your lists

comp(7035..7322)
DNA (288bp) protein (96aa)

This feature has no annotations

13_2_20cm_scaffold_5988_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7508..8413
DNA (906bp) protein (302aa)
czcD; cation efflux system protein czcD; K03295 cation efflux system protein, CDF family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalt-zinc-cadmium resistance protein CzcD id=2973321 bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cation transporter
13_2_20cm_scaffold_5988_17
unknown

Not on your lists

comp(8424..8720)
DNA (297bp) protein (99aa)

This feature has no annotations

13_2_20cm_scaffold_5988_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9388..10245
DNA (858bp) protein (286aa)
altronate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-galactarate dehydratase/altronate hydrolase-like protein id=2696008 bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
altronate dehydratase
Displaying 18 items

View Taxonomy