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13_2_20cm_scaffold_700

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_700_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..972)
DNA (972bp) protein (324aa)
menE1; 2-succinylbenzoate--CoA ligase (EC:6.2.1.26) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
menE1; 2-succinylbenzoate--CoA ligase (EC:6.2.1.26)
AMP-dependent synthetase and ligase id=3362959 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_700_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(969..1997)
DNA (1029bp) protein (343aa)
putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
alcohol dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
Putative NAD-dependent alcohol dehydrogenase id=3362960 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_700_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1994..2440)
DNA (447bp) protein (149aa)
carbon monoxide dehydrogenase subunit G; K09386 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbon monoxide dehydrogenase subunit G id=3362961 bin=GWA2_Methylomirabilis_73_35 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbon monoxide dehydrogenase subunit G
13_2_20cm_scaffold_700_4
unknown

Not on your lists

comp(2483..2890)
DNA (408bp) protein (136aa)

This feature has no annotations

13_2_20cm_scaffold_700_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2954..3967)
DNA (1014bp) protein (338aa)
GTPase or GTP-binding protein; K06947 id=14627508 bin=bin7_NC10_sister species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
GTPase or GTP-binding protein; K06947 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
GTPase or GTP-binding protein-like protein
13_2_20cm_scaffold_700_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3964..5169)
DNA (1206bp) protein (402aa)
aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase A (AspAT) id=4834180 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_700_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5187..5684)
DNA (498bp) protein (166aa)
pantetheine-phosphate adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphopantetheine adenylyltransferase id=3362963 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphopantetheine adenylyltransferase
13_2_20cm_scaffold_700_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5686..6180)
DNA (495bp) protein (165aa)
Methyltransferase id=3362964 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
putative methyltransferase
13_2_20cm_scaffold_700_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6386..8479)
DNA (2094bp) protein (698aa)
recG; ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent DNA helicase RecG id=3362965 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recG; ATP-dependent DNA helicase RecG
13_2_20cm_scaffold_700_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8545..8736
DNA (192bp) protein (64aa)
50S ribosomal protein L28 id=3362966 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L28
13_2_20cm_scaffold_700_11
unknown

Not on your lists

8765..9121
DNA (357bp) protein (119aa)

This feature has no annotations

13_2_20cm_scaffold_700_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8993..10042)
DNA (1050bp) protein (350aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14627009 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_700_13
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10197..11003)
DNA (807bp) protein (269aa)
bacteriocin n=1 Tax=Humibacter albus RepID=UPI0003B40ADC
Photosynthetic reaction center L subunit {ECO:0000313|EMBL:ERF83592.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="
Linocin_M18 bacteriocin protein
13_2_20cm_scaffold_700_14
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11000..11386)
DNA (387bp) protein (129aa)
ferritin n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B5E026
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC21774.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillu
13_2_20cm_scaffold_700_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11455..11829)
DNA (375bp) protein (125aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4319695 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_700_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11861..13933)
DNA (2073bp) protein (691aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5) Tax=GWA2_Rokubacteria_73_35_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (PpGpp synthetase I) ((P)ppGpp synthetase) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFC3_9BACT
13_2_20cm_scaffold_700_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13977..14918)
DNA (942bp) protein (314aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=14627006 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10 rbh
secF; preprotein translocase subunit SecF
13_2_20cm_scaffold_700_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14915..16471)
DNA (1557bp) protein (519aa)
protein translocase subunit; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protein translocase subunit; K03072 preprotein translocase subunit SecD id=14627005 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
protein translocase subunit
13_2_20cm_scaffold_700_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16464..16811)
DNA (348bp) protein (116aa)
Preprotein translocase subunit YajC id=4319700 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yajC; Preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC Tax=GWA2_Rokubacteria_73_35_curated
yajC; preprotein translocase subunit YajC
13_2_20cm_scaffold_700_20
unknown

Not on your lists

17050..17550
DNA (501bp) protein (167aa)

This feature has no annotations

13_2_20cm_scaffold_700_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17636..18331
DNA (696bp) protein (232aa)
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=4288064 bin=GWF2_Methylomirabilis_70_14 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
13_2_20cm_scaffold_700_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18289..18804
DNA (516bp) protein (172aa)
livK; branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=3209650 bin=GWC2_Methylomirabilis_70_24 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
branched-chain amino acid ABC transporter substrate-binding protein
13_2_20cm_scaffold_700_23
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18893..19636
DNA (744bp) protein (248aa)
Putative Asp/Glu/Hydantoin racemase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HD65_ACTM4 rbh
putative Asp/Glu/Hydantoin racemase
Putative Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:BAL90952.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missourie
13_2_20cm_scaffold_700_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19633..20760)
DNA (1128bp) protein (376aa)
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29) Tax=GWA2_Rokubacteria_73_35_curated
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase id=4319701 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_700_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20774..21160)
DNA (387bp) protein (129aa)
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=4319702 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
Displaying 25 items

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