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OR_07242016_12_scaffold_223

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07242016_12_scaffold_223_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2..496)
DNA (495bp) protein (165aa)
Two component transcriptional regulator, LuxR family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9C8_NIAKG
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEV98096.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
OR_07242016_12_scaffold_223_2
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(471..1277)
DNA (807bp) protein (269aa)
Two-component sensor histidine kinase Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GNK1_9SPHI
Two-component sensor histidine kinase {ECO:0000313|EMBL:EOR93100.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
signal transduction histidine kinase
OR_07242016_12_scaffold_223_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1238..1909)
DNA (672bp) protein (224aa)
Putative uncharacterized protein Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YFJ4_9SPHI
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(2012..3016)
DNA (1005bp) protein (335aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE29_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3152..4090
DNA (939bp) protein (313aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003815188
ABC transporter ATP-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4128..5462
DNA (1335bp) protein (445aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003769924
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5540..12811)
DNA (7272bp) protein (2424aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00035E2A36
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(12883..13467)
DNA (585bp) protein (195aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037A2A47
Holliday junction DNA helicase subunit RuvA
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_9
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13701..14696
DNA (996bp) protein (332aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815, ECO:0000256|SAAS:SAAS00048658};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
3-oxoacyl-ACP synthase Tax=Niabella aurantiaca RepID=UPI0003703708
3-oxoacyl-ACP synthase
OR_07242016_12_scaffold_223_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14727..15221)
DNA (495bp) protein (165aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036AD800
Uncharacterized protein {ECO:0000313|EMBL:GAO45580.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
DinB family protein
OR_07242016_12_scaffold_223_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

15287..16516
DNA (1230bp) protein (410aa)
methionine gamma-lyase (EC:4.4.1.11)
Cystathionine gamma-synthase Tax=Niabella soli DSM 19437 RepID=H1NUQ6_9SPHI
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16679..17128
DNA (450bp) protein (150aa)
GCN5-related N-acetyltransferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9X9_NIAKG
N-acetyltransferase GCN5
GNAT family acetyltransferase {ECO:0000313|EMBL:KIC93242.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
OR_07242016_12_scaffold_223_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17227..18117)
DNA (891bp) protein (297aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Malonyl CoA-acyl carrier protein transacylase Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRB6_CHIPD
malonyl CoA-acyl carrier protein transacylase
OR_07242016_12_scaffold_223_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18242..18838)
DNA (597bp) protein (199aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
GTP cyclohydrolase 1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9X6_NIAKG
GTP cyclohydrolase 1
OR_07242016_12_scaffold_223_15
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18862..19362)
DNA (501bp) protein (167aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
6-carboxy-5,6,7,8-tetrahydropterin synthase Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TRD7_MARTH
6-pyruvoyl-tetrahydropterin synthase
OR_07242016_12_scaffold_223_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19595..20005)
DNA (411bp) protein (137aa)
6-pyruvoyl tetrahydrobiopterin synthase Tax=Niabella aurantiaca RepID=UPI000363E81F
6-pyruvoyl tetrahydrobiopterin synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

20058..20813
DNA (756bp) protein (252aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036F1D7C
futalosine nucleosidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20864..21700
DNA (837bp) protein (279aa)
1,4-dihydroxy-6-naphtoate synthase {ECO:0000256|HAMAP-Rule:MF_00996}; EC=4.1.-.- {ECO:0000256|HAMAP-Rule:MF_00996};; Menaquinone biosynthetic enzyme MqnD {ECO:0000256|HAMAP-Rule:MF_00996}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9X2_NIAKG
hypothetical protein
OR_07242016_12_scaffold_223_19
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21690..23006)
DNA (1317bp) protein (439aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003717212
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KIC89303.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
deoxyribodipyrimidine photo-lyase
OR_07242016_12_scaffold_223_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(23102..23947)
DNA (846bp) protein (282aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037BFF3B
class IV aminotransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24081..25181
DNA (1101bp) protein (367aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Putative GTP cyclohydrolase 1 type 2 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THA9_NIAKG
NGG1p interacting factor 3 protein, NIF3
OR_07242016_12_scaffold_223_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

25271..26026
DNA (756bp) protein (252aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003783BB0
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26215..27705
DNA (1491bp) protein (497aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000363EAC6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01717.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
OR_07242016_12_scaffold_223_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27868..29469
DNA (1602bp) protein (534aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003799D6A
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
OR_07242016_12_scaffold_223_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29582..30397
DNA (816bp) protein (272aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Enoyl-[acyl-carrier-protein] reductase [NADH] Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KSP6_SOLCM
enoyl-(acyl carrier protein) reductase
OR_07242016_12_scaffold_223_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

30444..30716
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Fulvivirga imtechensis AK7 RepID=L8K268_9BACT
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_27
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(30814..31035)
DNA (222bp) protein (74aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003615650
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_223_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

31180..31725
DNA (546bp) protein (182aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037F5CE3
ABC transporter ATP-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 28 items

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