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OR_07232018_dam_0_1um_scaffold_109

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_109_1
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..528)
DNA (528bp) protein (176aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
tRNA modification GTPase MnmE n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X091_THIK1
tRNA modification GTPase TrmE
OR_07232018_dam_0_1um_scaffold_109_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(559..2253)
DNA (1695bp) protein (565aa)
Membrane protein insertase YidC n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X092_THIK1
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
membrane protein insertase, YidC/Oxa1 family domain containing protein
OR_07232018_dam_0_1um_scaffold_109_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2300..2707)
DNA (408bp) protein (136aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPB8_THIA3
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_109_4
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2704..3123)
DNA (420bp) protein (140aa)
Ribonuclease P protein component {ECO:0000256|SAAS:SAAS00143752}; EC=3.1.26.5 {ECO:0000256|SAAS:SAAS00143815};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Ribosomal protein S5 domain 2-like n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPB9_THIA3
putative Ribosomal protein S5 domain 2-like
OR_07232018_dam_0_1um_scaffold_109_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3919..5289
DNA (1371bp) protein (457aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CKF3_THIA3
dnaA; Chromosomal replication initiator protein dnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_109_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5615..6730
DNA (1116bp) protein (372aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
DNA polymerase III subunit beta n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2E4_THIK1
OR_07232018_dam_0_1um_scaffold_109_7
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6807..9290
DNA (2484bp) protein (828aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
DNA gyrase subunit B n=2 Tax=Thiomonas RepID=D5X2E5_THIK1
OR_07232018_dam_0_1um_scaffold_109_8
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9576..10829
DNA (1254bp) protein (418aa)
Amidase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYU6_THIK1
amidase
Amidase {ECO:0000313|EMBL:ADG32273.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_109_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10874..12076)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYU7_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG32274.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_109_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12275..12754)
DNA (480bp) protein (160aa)
putative 4-hydroxybenzoate synthetase (chorismate lyase) (EC:4.1.3.40)
Probable chorismate pyruvate-lyase {ECO:0000256|HAMAP-Rule:MF_01632}; Short=CL {ECO:0000256|HAMAP-Rule:MF_01632};; Short=CPL {ECO:0000256|HAMAP-Rule:MF_01632};; EC=4.1.3.40 {ECO:0000256|HAMAP-Rule:MF_01632, ECO:0000313|EMBL:CAZ90075.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Probable chorismate pyruvate-lyase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNE7_THIA3
OR_07232018_dam_0_1um_scaffold_109_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12886..13551)
DNA (666bp) protein (222aa)
Carboxymethylenebutenolidase (EC:3.1.1.45)
Carboxymethylenebutenolidase {ECO:0000313|EMBL:ADG32276.1}; EC=3.1.1.45 {ECO:0000313|EMBL:ADG32276.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Carboxymethylenebutenolidase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYU9_THIK1
OR_07232018_dam_0_1um_scaffold_109_12
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13654..14565)
DNA (912bp) protein (304aa)
Putative HTH-type transcriptional regulator metR n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNE9_THIA3
putative HTH-type transcriptional regulator metR
Putative HTH-type transcriptional regulator metR {ECO:0000313|EMBL:CAZ90077.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_109_13
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14681..17074
DNA (2394bp) protein (798aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYV1_THIK1
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase
OR_07232018_dam_0_1um_scaffold_109_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17237..19594
DNA (2358bp) protein (786aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYV2_THIK1
Uncharacterized protein {ECO:0000313|EMBL:ADG32279.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_109_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19808..20752
DNA (945bp) protein (315aa)
Putative ABC-type molybdate transport system, periplasmic component n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNF3_THIA3
putative ABC-type molybdate transport system, periplasmic component
Putative ABC-type molybdate transport system, periplasmic component {ECO:0000313|EMBL:CAZ90081.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_109_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20749..21609
DNA (861bp) protein (287aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ83_THIK1
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDW93780.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
binding-protein-dependent transport system inner membrane protein
OR_07232018_dam_0_1um_scaffold_109_17
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21619..22653
DNA (1035bp) protein (345aa)
Putative ABC transporter, ATPase components (EC:3.6.3.29)
ABC transporter related protein n=2 Tax=Thiomonas RepID=D5WZ84_THIK1
ABC transporter related protein {ECO:0000313|EMBL:CDW93779.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_109_18
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22663..23043)
DNA (381bp) protein (127aa)
Putative transcriptional regulator, ModE family n=2 Tax=Thiomonas RepID=D5WZ85_THIK1
Putative transcriptional regulator, ModE family {ECO:0000313|EMBL:CDW93778.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Putative transcriptional regulator, ModE family
OR_07232018_dam_0_1um_scaffold_109_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23078..23971)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ86_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG32284.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_109_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24140..25279
DNA (1140bp) protein (380aa)
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ87_THIK1
Putative C4-dicarboxylate transporter/malic acid transport protein {ECO:0000313|EMBL:CDW93776.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
C4-dicarboxylate transporter/malic acid transport protein
OR_07232018_dam_0_1um_scaffold_109_21
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25288..25929)
DNA (642bp) protein (214aa)
Putative Cytoplasmic chaperone TorD n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNF9_THIA3
putative Cytoplasmic chaperone TorD
Putative Cytoplasmic chaperone TorD {ECO:0000313|EMBL:CAZ90087.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_109_22
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25935..28145)
DNA (2211bp) protein (737aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ89_THIK1
Putative 4Fe-4S ferredoxin {ECO:0000313|EMBL:CDW93774.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
4Fe-4S ferredoxin
OR_07232018_dam_0_1um_scaffold_109_23
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28142..28735)
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ90_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW93773.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_109_24
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28732..29313)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNG2_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ90090.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_109_25
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29310..30200)
DNA (891bp) protein (297aa)
Formate dehydrogenase subunit FdhD n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ92_THIK1
Formate dehydrogenase subunit FdhD {ECO:0000313|EMBL:CDW93771.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
formate dehydrogenase subunit FdhD
OR_07232018_dam_0_1um_scaffold_109_26
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30291..30608)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNG4_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ90092.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_109_27
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30619..31815)
DNA (1197bp) protein (399aa)
Formate dehydrogenase, gamma subunit n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ94_THIK1
formate dehydrogenase subunit gamma
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:ADG32292.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_109_28
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31825..32058)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNG6_THIA3
conserved hypothetical protein, lipoprotein precursor; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ90094.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_109_29
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32055..32690)
DNA (636bp) protein (212aa)
fdhB; formate dehydrogenase iron-sulfur subunit (EC:1.2.1.2)
Formate dehydrogenase iron-sulfur subunit {ECO:0000313|EMBL:CAZ90095.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CAZ90095.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
4Fe-4S ferredoxin iron-sulfur binding domain protein n=2 Tax=Thiomonas RepID=D5WZ96_THIK1
OR_07232018_dam_0_1um_scaffold_109_30
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32722..35709)
DNA (2988bp) protein (996aa)
nitrate reductase (EC:1.7.99.4)
Nitrate reductase {ECO:0000313|EMBL:ADG32295.1}; EC=1.7.99.4 {ECO:0000313|EMBL:ADG32295.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Nitrate reductase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ97_THIK1
Displaying items 1-30 of 54 in total

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