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OR_07232018_dam_0_1um_scaffold_260

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_260_1
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..778)
DNA (777bp) protein (259aa)
Putative Bacterial chemotaxis sensory transducer n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQF4_THIA3
putative Bacterial chemotaxis sensory transducer
Putative Bacterial chemotaxis sensory transducer {ECO:0000313|EMBL:CAZ88234.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_2
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(793..3042)
DNA (2250bp) protein (750aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
CheA signal transduction histidine kinase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0H5_THIK1
CheA signal transduction histidine kinase
OR_07232018_dam_0_1um_scaffold_260_3
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3039..3380)
DNA (342bp) protein (114aa)
Putative Sulfate transporter/antisigma-factor antagonist STAS n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQF6_THIA3
putative Sulfate transporter/antisigma-factor antagonist STAS
Putative Sulfate transporter/antisigma-factor antagonist STAS {ECO:0000313|EMBL:CAZ88236.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_4

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comp(3400..3768)
DNA (369bp) protein (123aa)
Chemotaxis protein CheY n=1 Tax=mine drainage metagenome RepID=E6PM86_9ZZZZ
Chemotaxis protein CheY {ECO:0000313|EMBL:CBH96038.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cheY4; Chemotaxis protein CheY
OR_07232018_dam_0_1um_scaffold_260_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3815..4798)
DNA (984bp) protein (328aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0H8_THIK1
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ADG30624.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_260_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4806..5195)
DNA (390bp) protein (130aa)
Response regulator receiver protein n=2 Tax=Thiomonas RepID=D5X0H9_THIK1
putative CheY-like receiver
Putative CheY-like receiver {ECO:0000313|EMBL:CAZ88239.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5332..5967)
DNA (636bp) protein (212aa)
Putative two-component regulatory systems n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQG0_THIA3
putative two-component regulatory systems
Putative two-component regulatory systems {ECO:0000313|EMBL:CAZ88240.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_8
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5975..7027)
DNA (1053bp) protein (351aa)
Putative Signal transduction histidine kinase,putative VsrA n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQG1_THIA3
putative Signal transduction histidine kinase,putative VsrA
Putative Signal transduction histidine kinase,putative VsrA {ECO:0000313|EMBL:CAZ88241.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7124..8077)
DNA (954bp) protein (318aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
tRNA dimethylallyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0I2_THIK1
tRNA delta(2)-isopentenylpyrophosphate transferase
OR_07232018_dam_0_1um_scaffold_260_10
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8080..10065)
DNA (1986bp) protein (662aa)
DNA mismatch repair protein MutL n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQG3_THIA3
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative DNA mismatch repair protein mutL
OR_07232018_dam_0_1um_scaffold_260_11
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10176..10820
DNA (645bp) protein (215aa)
SNARE associated Golgi protein-related protein n=2 Tax=Thiomonas RepID=D5X0I4_THIK1
dedA; Protein dedA (Protein DSG-1)
Protein dedA (Protein DSG-1) {ECO:0000313|EMBL:CAZ88244.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10828..11514)
DNA (687bp) protein (229aa)
lexA; LexA repressor (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
LexA repressor n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQG5_THIA3
OR_07232018_dam_0_1um_scaffold_260_13
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11650..12627
DNA (978bp) protein (326aa)
putative L-asparaginase (EC:3.5.1.1)
Putative L-asparaginase {ECO:0000313|EMBL:CAZ88246.1}; EC=3.5.1.1 {ECO:0000313|EMBL:CAZ88246.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative L-asparaginase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQG6_THIA3
OR_07232018_dam_0_1um_scaffold_260_14
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12671..14110)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative two-component sensor histidine kinase envZ (EC:2.7.13.3)
Putative two-component sensor histidine kinase envZ n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSU9_THIA3
OR_07232018_dam_0_1um_scaffold_260_15
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14079..14807)
DNA (729bp) protein (243aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Thiomonas RepID=D5X0V7_THIK1
ompR4; Transcriptional regulatory protein ompR
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADG30753.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_260_16
unknown

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14967..15281
DNA (315bp) protein (105aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_260_17
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15643..16263
DNA (621bp) protein (207aa)
MotA/TolQ/ExbB proton channel n=2 Tax=Thiomonas RepID=D5X1Q4_THIK1
putative Biopolymer transport protein MotA/TolQ/ExbB
Putative Biopolymer transport protein MotA/TolQ/ExbB {ECO:0000313|EMBL:CAZ88754.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_18
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16279..16698
DNA (420bp) protein (140aa)
Biopolymer transport protein ExbD/TolR n=2 Tax=Thiomonas RepID=D5X1Q3_THIK1
putative Biopolymer transport protein ExbD/TolR
Putative Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:CAZ88753.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_19
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16698..17744
DNA (1047bp) protein (349aa)
putative Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) LpxK (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Tetraacyldisaccharide 4'-kinase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CTY3_THIA3
OR_07232018_dam_0_1um_scaffold_260_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17725..17946
DNA (222bp) protein (74aa)
UPF0434 protein THI_2097 n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CTY2_THIA3
UPF0434 protein THICB2_730046 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_260_21
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17943..18725
DNA (783bp) protein (261aa)
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1Q0_THIK1
OR_07232018_dam_0_1um_scaffold_260_22
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18812..19468
DNA (657bp) protein (219aa)
adk; Adenylate kinase (ATP-AMP transphosphorylase) (AK) (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Adenylate kinase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CTY0_THIA3
OR_07232018_dam_0_1um_scaffold_260_23
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19490..20248
DNA (759bp) protein (253aa)
scu; 3-hydroxyacyl-CoA dehydrogenase type-2 (3-hydroxyacyl-CoA dehydrogenase type II) (Type II HADH) (3-hydroxy-2-methylbutyryl-CoA dehydrogenase) (Scully protein) (EC:1.1.1.35 1.1.1.178)
3-hydroxyacyl-CoA dehydrogenase type-2 (3-hydroxyacyl-CoA dehydrogenase type II) (Type II HADH) (3-hydroxy-2-methylbutyryl-CoA dehydrogenase) (Scully protein) {ECO:0000313|EMBL:CAZ88748.1}; EC=1.1.1.178 {ECO:0000313|EMBL:CAZ88748.1};; EC=1.1.1.35 {ECO:0000313|EMBL:CAZ88748.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
3-hydroxyacyl-CoA dehydrogenase type-2 (3-hydroxyacyl-CoA dehydrogenase type II) (Type II HADH) (3-hydroxy-2-methylbutyryl-CoA dehydrogenase) (Scully protein) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CTX9_THIA3
OR_07232018_dam_0_1um_scaffold_260_24
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20288..22183
DNA (1896bp) protein (632aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
DNA primase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1P7_THIK1
DNA primase
OR_07232018_dam_0_1um_scaffold_260_25
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22180..23091
DNA (912bp) protein (304aa)
Poly(3-hydroxybutyrate) depolymerase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSV2_THIA3
phaZ3; Poly(3-hydroxybutyrate) depolymerase
Poly(3-hydroxybutyrate) depolymerase {ECO:0000313|EMBL:CAZ88371.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_260_26
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23088..25286
DNA (2199bp) protein (733aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:ADG30756.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ADG30756.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0W0_THIK1
OR_07232018_dam_0_1um_scaffold_260_trna_1
unknown

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25331..25404
DNA (74bp)
transferRNA Val
OR_07232018_dam_0_1um_scaffold_260_27
unknown

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25643..25777
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 28 items

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