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Ig5772_scaffold_314

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig5772_scaffold_314_1
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(343..1176)
DNA (834bp) protein (278aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7)
diaminopimelate epimerase n=1 Tax=Hirschia maritima RepID=UPI000363A3AF
Ig5772_scaffold_314_2
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1321..3453
DNA (2133bp) protein (711aa)
Prolyl endopeptidase {ECO:0000313|EMBL:GAM99541.1}; EC=3.4.21.26 {ECO:0000313|EMBL:GAM99541.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
prolyl oligopeptidase (EC:3.4.21.26) rbh
Prolyl oligopeptidase n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XKY3_HIRBI rbh
Ig5772_scaffold_314_3
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3478..4551)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000361A080 rbh
aminoglycoside phosphotransferase rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Ig5772_scaffold_314_4
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4548..4904)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI00037D77DC
Uncharacterized protein {ECO:0000313|EMBL:KCZ88069.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
hypothetical protein
Ig5772_scaffold_314_5
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4908..6146)
DNA (1239bp) protein (413aa)
Monooxygenase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C3I1_HYPNA rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ47711.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
monooxygenase rbh
Ig5772_scaffold_314_6
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6321..7145
DNA (825bp) protein (275aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R811_PHEZH rbh
enoyl-CoA hydratase/isomerase rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ACG77544.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Ig5772_scaffold_314_7
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7279..8067
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9L4_PHEZH rbh
short-chain dehydrogenase/reductase SDR rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Ig5772_scaffold_314_8
Methanothermobacter thermautotrophicus, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8064..8819)
DNA (756bp) protein (252aa)
Tetratricopeptide repeat domain-containing protein n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PWV8_METTM
tetratricopeptide repeat domain-containing protein
O-linked GlcNAc transferase {ECO:0000313|EMBL:AAB84589.1}; TaxID=187420 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 /; JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium; thermoautotrophicum).;"
Ig5772_scaffold_314_9
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8876..9556)
DNA (681bp) protein (227aa)
Hly-III family protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T216_CAUSK
Membrane protein hemolysin III homolog {ECO:0000313|EMBL:GAN00418.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Hly-III family protein
Ig5772_scaffold_314_10
unknown

Not on your lists

comp(9611..10309)
DNA (699bp) protein (233aa)

This feature has no annotations

Ig5772_scaffold_314_11
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10365..11045)
DNA (681bp) protein (227aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFP4_PHEZH
cAMP-binding proteins {ECO:0000313|EMBL:GAN00215.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
CarD family transcriptional regulator
Ig5772_scaffold_314_12
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11261..11767
DNA (507bp) protein (169aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Holliday junction resolvase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ABD1
ruvC; Holliday junction resolvase
Ig5772_scaffold_314_13
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11806..12426
DNA (621bp) protein (207aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein n=1 Tax=Robiginitomaculum antarcticum RepID=UPI00035D24B9
Holliday junction DNA helicase RuvA
Ig5772_scaffold_314_14
unknown

Not on your lists

12505..12654
DNA (150bp) protein (50aa)

This feature has no annotations

Ig5772_scaffold_314_15
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12728..13756
DNA (1029bp) protein (343aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QPY6_BREDI
Holliday junction DNA helicase RuvB
Ig5772_scaffold_314_16
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13802..14038
DNA (237bp) protein (79aa)
Transcriptional regulator, CopG family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AYB8_PARDP
CopG family transcriptional regulator
Transcriptional regulator, CopG family {ECO:0000313|EMBL:ABL68262.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Ig5772_scaffold_314_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14038..14349
DNA (312bp) protein (104aa)
UPI0003CFE872 related cluster n=1 Tax=unknown RepID=UPI0003CFE872
Plasmid stabilization system protein {ECO:0000313|EMBL:EYR82490.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
plasmid stabilization system protein
Ig5772_scaffold_314_18
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14354..16204)
DNA (1851bp) protein (617aa)
ABC transporter, ATP-binding protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UHA8_9RHOB rbh
Oligopeptide transport system permease protein OppB {ECO:0000313|EMBL:GAM98084.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
peptide ABC transporter ATP-binding protein rbh
Ig5772_scaffold_314_19
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16265..17323)
DNA (1059bp) protein (353aa)
Rieske 2Fe-2S family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C5W6_HYPNA rbh
Rieske 2Fe-2S family protein {ECO:0000313|EMBL:KCZ88679.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
Rieske 2Fe-2S family protein rbh
Ig5772_scaffold_314_20
unknown

Not on your lists

comp(17320..17580)
DNA (261bp) protein (87aa)

This feature has no annotations

Ig5772_scaffold_314_21
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17597..18055)
DNA (459bp) protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM98639.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Ig5772_scaffold_314_22
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18084..19664)
DNA (1581bp) protein (527aa)
carboxypeptidase S (EC:3.4.17.4)
peptidase M20 n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00035F1FC0
Peptidase, M20/M25/M40 family {ECO:0000313|EMBL:GAM98638.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Ig5772_scaffold_314_23
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

19694..20236
DNA (543bp) protein (181aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
alkylhydroperoxidase AhpD family (EC:1.11.1.15)
Alkyl hydroperoxide reductase AhpD n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT4_BREDI
Ig5772_scaffold_314_24
unknown

Not on your lists

comp(20233..20751)
DNA (519bp) protein (173aa)

This feature has no annotations

Ig5772_scaffold_314_25
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20819..21937
DNA (1119bp) protein (373aa)
Aminobutyraldehyde dehydrogenase {ECO:0000313|EMBL:GAM99546.1}; EC=1.2.1.19 {ECO:0000313|EMBL:GAM99546.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C11BD5
FAD dependent oxidoreductase
Ig5772_scaffold_314_26
unknown

Not on your lists

comp(22111..22605)
DNA (495bp) protein (165aa)

This feature has no annotations

Ig5772_scaffold_314_27
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22914..24233
DNA (1320bp) protein (440aa)
Sodium:dicarboxylate symporter n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QHX2_BRESC rbh
sodium:dicarboxylate symporter rbh
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ADL01230.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
Ig5772_scaffold_314_28
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24292..24630
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Ponticaulis koreensis RepID=UPI0003B5B0BE
Uncharacterized protein {ECO:0000313|EMBL:GAM99543.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
Ig5772_scaffold_314_29
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24627..25535)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Ponticaulis koreensis RepID=UPI0003B585CC rbh
Hydrogen peroxide-inducible genes activator {ECO:0000313|EMBL:GAM99544.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
LysR family transcriptional regulator
Ig5772_scaffold_314_30
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25700..26899
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002FF704E rbh
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
Displaying items 1-30 of 46 in total

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