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SR-VP_0-2_scaffold_141_2862923

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_0-2_scaffold_141_2862923_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1..894)
DNA (894bp) protein (298aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZH6_METCG
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(972..1775)
DNA (804bp) protein (268aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNV8_METZD
SR-VP_0-2_scaffold_141_2862923_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1777..2409)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I510_METCZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2530..3186
DNA (657bp) protein (219aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Geobacter sp. (strain M21) RepID=UBIE_GEOSM
ubiquinone/menaquinone biosynthesis methyltransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3237..4154
DNA (918bp) protein (306aa)
Glycosyl transferase, family 2 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12VX4_METBU
glycosyl transferase family protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_0-2_scaffold_141_2862923_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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4151..4807
DNA (657bp) protein (219aa)
NADPH-dependent F420 reductase; K06988 id=14424576 bin=bin1_lowGC species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
NADPH-dependent F420 reductase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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4820..5410
DNA (591bp) protein (197aa)
DNA-3-methyladenine glycosylase III (EC:3.2.2.-)
3-Methyladenine DNA glycosylase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12UW8_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5444..6166)
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71166.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative uncharacterized protein id=2995956 bin=GWC1_Spirochaetes_27_15 species=Moritella sp. PE36 genus=Moritella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
putative uncharacterized protein, SAM dependent methyltransferase
SR-VP_0-2_scaffold_141_2862923_9
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6181..6852)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JBP4_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KGP75221.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
SR-VP_0-2_scaffold_141_2862923_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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7152..8150
DNA (999bp) protein (333aa)
Radical SAM domain protein n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L7B8_KORCO
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:KCZ72907.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
radical SAM domain-containing protein
SR-VP_0-2_scaffold_141_2862923_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8353..9690)
DNA (1338bp) protein (446aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMA9_METZD
Phosphoglyceromutase {ECO:0000313|EMBL:KCZ72351.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative phosphoglycerate mutase
SR-VP_0-2_scaffold_141_2862923_12
unknown

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10076..10744
DNA (669bp) protein (223aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2862923_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(10946..11971)
DNA (1026bp) protein (342aa)
DNA primase large subunit PriL n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E959_METEZ
DNA primase large subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(11974..12711)
DNA (738bp) protein (246aa)
DNA polymerase sliding clamp n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=PCNA_METBU
DNA polymerase sliding clamp
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_15
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12903..13475
DNA (573bp) protein (191aa)
Response regulator receiver protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E7V8_METEZ
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADI74181.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303).;"
SR-VP_0-2_scaffold_141_2862923_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13507..13725)
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71796.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_2862923_17
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

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14527..16836
DNA (2310bp) protein (770aa)
Sensory transduction histidine kinase {ECO:0000313|EMBL:AKG53521.1}; TaxID=943347 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas sp. WBC-2.;"
PAS/PAC sensor hybrid histidine kinase id=7201200 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
multi-sensor hybrid histidine kinase
SR-VP_0-2_scaffold_141_2862923_18
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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16936..17424
DNA (489bp) protein (163aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(17432..18670)
DNA (1239bp) protein (413aa)
proteasome-activating nucleotidase (EC:3.6.1.3)
Proteasome-activating nucleotidase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9X8_METMS
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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18722..19261
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBF5_METEZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19258..19680
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B629_METTP
UPF0201 protein ANME2D_01094 {ECO:0000256|HAMAP-Rule:MF_01112}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_0-2_scaffold_141_2862923_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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19680..20660
DNA (981bp) protein (327aa)
Cytochrome c assembly protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NNR3_9DELT
cytochrome c assembly protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_23
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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20657..21250
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NNR4_9DELT
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2862923_24
Arundo donax, Arundo, Poales, commelinids, Streptophyta, Viridiplantae

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comp(21283..22083)
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Neospora caninum (strain Liverpool) RepID=F0VP38_NEOCL
Uncharacterized protein {ECO:0000313|EMBL:JAE00620.1}; TaxID=35708 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Arundinoideae; Arundineae; Arundo.;" source="Arundo donax (Giant reed) (Donax arundinaceus).;"
hypothetical protein
SR-VP_0-2_scaffold_141_2862923_25
unknown

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comp(22091..22777)
DNA (687bp) protein (229aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2862923_26
unknown

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comp(22774..23277)
DNA (504bp) protein (168aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2862923_27
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(23376..27287)
DNA (3912bp) protein (1304aa)
UPI0003D1C796 related cluster n=1 Tax=unknown RepID=UPI0003D1C796
APHP domain-containing protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_0-2_scaffold_141_2862923_28
Lactobacillus melliventris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(27314..29347)
DNA (2034bp) protein (678aa)
Collagen triple helix repeat protein n=1 Tax=Psychrobacter sp. 1501(2011) RepID=F5SSK1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJY57181.1}; TaxID=1218507 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus melliventris.;"
hypothetical protein
SR-VP_0-2_scaffold_141_2862923_29
unknown

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29656..29880
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying 29 items

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