ggKbase home page

SR-VP_26_10_2019_2_100cm_scaffold_5139

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_5139_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3..218
DNA (216bp) protein (72aa)
succinate dehydrogenase or fumarate reductase, flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L635_KORCO
Tax=RBG_13_Bathyarchaeota_46_16b_curated
SR-VP_26_10_2019_2_100cm_scaffold_5139_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(151..405)
DNA (255bp) protein (85aa)
ABC transporter permease; K02004 putative ABC transport system permease protein id=5048626 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ABC transporter permease
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_5139_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(426..1628)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Methanococcus maripaludis X1 RepID=G0H4M5_METMI
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5139_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(1625..2302)
DNA (678bp) protein (226aa)
ABC transporter related protein n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S5E3_CALKI
ABC transporter-like protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5139_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(2302..2703)
DNA (402bp) protein (134aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5139_6
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2834..3928)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B775_METTP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK14549.1}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta thermophila (strain DSM 6194 / PT) (Methanothrix; thermophila (strain DSM 6194 / PT)).;"
SR-VP_26_10_2019_2_100cm_scaffold_5139_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3935..4819)
DNA (885bp) protein (295aa)
PHP domain protein n=1 Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=A6UTR0_META3
Putative metal-dependent phosphoesterase, PHP family {ECO:0000313|EMBL:KCZ73309.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
phosphotransferase domain-containing protein
SR-VP_26_10_2019_2_100cm_scaffold_5139_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5060..6256)
DNA (1197bp) protein (399aa)
ABC transporter permease; K02004 putative ABC transport system permease protein id=5048626 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Cell division protein FtsX
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_5139_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6311..7693)
DNA (1383bp) protein (461aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72702.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein id=5048625 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_5139_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7693..8418)
DNA (726bp) protein (242aa)
ABC transporter ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] id=5048624 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:KCZ72703.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Cell division transporter, ATP-binding protein FtsE
SR-VP_26_10_2019_2_100cm_scaffold_5139_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(8637..9149)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037CAC41
MarR family regulator
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5139_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9210..9665)
DNA (456bp) protein (152aa)
Transcriptional regulator n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZR38_THELI
transcriptional regulator
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_5139_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(9669..10646)
DNA (978bp) protein (326aa)
O-methyltransferase family 2 n=6 Tax=Pelosinus fermentans RepID=I8RIA2_9FIRM
O-methyltransferase family 2
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5139_14
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

10759..11628
DNA (870bp) protein (290aa)
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein id=5802131 bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
ABC transporter-like protein
Tax=RBG_16_Nitrospirae_43_8_curated
Displaying 14 items

View Taxonomy