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SR-VP_26_10_2019_2_100cm_scaffold_3168

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_3168_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(223..627)
DNA (405bp) protein (135aa)
Sirohydrochlorin cobaltochelatase {ECO:0000256|HAMAP-Rule:MF_00785}; EC=4.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00785};; CbiXS {ECO:0000256|HAMAP-Rule:MF_00785}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Sirohydrochlorin cobaltochelatase (EC:4.99.1.3)
Sirohydrochlorin cobaltochelatase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLE8_METZD
SR-VP_26_10_2019_2_100cm_scaffold_3168_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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688..1302
DNA (615bp) protein (205aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_00077}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tRNA (cytidine(56)-2'-O)-methyltransferase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZH5_METHD
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3168_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1299..2396
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TJB8_METAC
Putative ATP-dependent carboligase {ECO:0000313|EMBL:KCZ70652.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3168_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2486..3115
DNA (630bp) protein (210aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Endonuclease III n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PVQ3_METMZ
Endonuclease III
SR-VP_26_10_2019_2_100cm_scaffold_3168_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3120..3566
DNA (447bp) protein (149aa)
DNA ligase D-like 3'-phosphoesterase domain-containing protein {ECO:0000313|EMBL:KCZ72645.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KCZ72645.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA ligase D-like 3'-phosphoesterase domain-containing protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TA23_9EURY
DNA ligase D
SR-VP_26_10_2019_2_100cm_scaffold_3168_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3771..4334
DNA (564bp) protein (188aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase {ECO:0000313|EMBL:KCZ72644.1}; EC=4.1.2.17 {ECO:0000313|EMBL:KCZ72644.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Class II aldolase/adducin family protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBP8_METEZ
class II aldolase/adducin family protein
SR-VP_26_10_2019_2_100cm_scaffold_3168_7
RifOxyA12_full_OD1_Moranbacteria_35_19_curated, Moranbacteria, Parcubacteria, Bacteria

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comp(4405..4815)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003776334
hypothetical protein
Tax=RifOxyA12_full_OD1_Moranbacteria_35_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3168_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5162..5425
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JJ34_9ARCH id=1241696 bin=RBG2 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG2 organism_group=Chloroflexi
Uncharacterized protein {ECO:0000313|EMBL:KCZ71065.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3168_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5418..5648
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UCL5_9CYAN id=1241695 bin=RBG2 species=Microcoleus vaginatus genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=RBG2 organism_group=Chloroflexi
YcfA-like protein {ECO:0000313|EMBL:KCZ71066.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3168_10
unknown

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comp(5712..5894)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JDX0_9ARCH
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3168_11
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6438..6815)
DNA (378bp) protein (126aa)
GxxExxY protein
Uncharacterized protein id=4349822 bin=GWF2_Lentisphaerae_49_21 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWC2_Geobacteraceae_53_11_curated
SR-VP_26_10_2019_2_100cm_scaffold_3168_12
unknown

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7293..7502
DNA (210bp) protein (70aa)
Uncharacterized protein id=4811291 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3168_13
unknown

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7525..8304
DNA (780bp) protein (260aa)
lsrF; putative aldolase LsrF (EC:4.1.2.-)
fructose-bisphosphate aldolase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B7BA39
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3168_14
unknown

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8313..9293
DNA (981bp) protein (327aa)
alcohol dehydrogenase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B74ACC
theronine dehydrogenase-like Zn-dependent dehydrogenase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3168_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9371..9661
DNA (291bp) protein (97aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MDN6_9EURY
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C
SR-VP_26_10_2019_2_100cm_scaffold_3168_16
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9662..11080
DNA (1419bp) protein (473aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KV76_METHD
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3168_17
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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11080..12591
DNA (1512bp) protein (504aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=GATB_METBU
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3168_18
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12910..13719)
DNA (810bp) protein (270aa)
Uncharacterized protein n=6 Tax=Bacillus cereus RepID=R8DVC3_BACCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOO52543.1}; TaxID=1053174 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG1X2-2.;"
SR-VP_26_10_2019_2_100cm_scaffold_3168_19
unknown

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comp(13716..13844)
DNA (129bp) protein (43aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3168_20
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14318..14818
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILT6_NITGG
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3168_21
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14821..15120
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICJ9_NITGG
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3168_22
unknown

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15391..16341
DNA (951bp) protein (317aa)
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39)
Ribulose-bisphosphate carboxylase n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I7B2_METB6
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 22 items

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