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SR-VP_26_10_2019_2_100cm_scaffold_4960

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_4960_1
CG_Pacearch_04, Pacearchaeota, Archaea

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1..207
DNA (207bp) protein (69aa)
Tax=CG_Pacearch_04
SR-VP_26_10_2019_2_100cm_scaffold_4960_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(229..666)
DNA (438bp) protein (146aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_4960_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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724..1737
DNA (1014bp) protein (338aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_4960_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1770..2780
DNA (1011bp) protein (337aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_4960_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2831..3232
DNA (402bp) protein (134aa)
UPF0107 protein MA_0244 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Y244_METAC
UPF0107 protein ANME2D_00866 {ECO:0000256|HAMAP-Rule:MF_00078}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_4960_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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3229..3450
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPC8_METZD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_4960_trna_1
unknown

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comp(3477..3548)
DNA (72bp)
transferRNA Gly
SR-VP_26_10_2019_2_100cm_scaffold_4960_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3727..4986
DNA (1260bp) protein (420aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Histidinol dehydrogenase n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1Q6V4_METMZ
Histidinol dehydrogenase
SR-VP_26_10_2019_2_100cm_scaffold_4960_8
unknown

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5088..5543
DNA (456bp) protein (152aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_4960_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5934..10766
DNA (4833bp) protein (1611aa)
DNA polymerase II large subunit {ECO:0000256|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00324};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
XRE family transcriptional regulator (EC:2.7.7.7)
DNA polymerase II large subunit n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSZ3_ARCVS
SR-VP_26_10_2019_2_100cm_scaffold_4960_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10844..11377)
DNA (534bp) protein (178aa)
Heat shock protein DnaJ-like protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4M9K9_9EURY
heat shock protein DnaJ-like protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_4960_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11513..11929)
DNA (417bp) protein (139aa)
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:KCZ73320.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KCZ73320.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ATP-dependent RNA helicase n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PBJ3_METMZ
putative ATP-dependent RNA helicase
Displaying 12 items

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