ggKbase home page

SR-VP_26_10_2019_2_100cm_scaffold_1376

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_1376_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52..861)
DNA (810bp) protein (270aa)
Uroporphyrinogen-III synthase / Homolog of E. coli HemX protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFE7_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_2
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1151..2395
DNA (1245bp) protein (415aa)
hypothetical protein id=7202297 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=BJP_IG2069_Syntrophobacterales_46_30
SR-VP_26_10_2019_2_100cm_scaffold_1376_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2583..3551)
DNA (969bp) protein (323aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
thiamin-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PX57_METMA
SR-VP_26_10_2019_2_100cm_scaffold_1376_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3639..4346
DNA (708bp) protein (236aa)
Sec-independent protein translocase protein TatC n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PTX3_METMA
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tatC; Sec-independent protein translocase
SR-VP_26_10_2019_2_100cm_scaffold_1376_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4673..5893
DNA (1221bp) protein (407aa)
Dihydropteroate synthase {ECO:0000313|EMBL:KCZ71977.1}; EC=2.5.1.15 {ECO:0000313|EMBL:KCZ71977.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12V25_METBU
SR-VP_26_10_2019_2_100cm_scaffold_1376_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5896..6522
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E5X9_METEZ
Methylene-tetrahydrofolate reductase C terminal {ECO:0000313|EMBL:KCZ71976.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_1376_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6519..7385
DNA (867bp) protein (289aa)
Methylenetetrahydrofolate reductase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MF94_9EURY
5,10-methylenetetrahydrofolate reductase {ECO:0000313|EMBL:KCZ71975.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
methylenetetrahydrofolate reductase
SR-VP_26_10_2019_2_100cm_scaffold_1376_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7387..8634
DNA (1248bp) protein (416aa)
UPI0003D1C35E related cluster n=1 Tax=unknown RepID=UPI0003D1C35E
Thiamine biosynthesis protein ThiC {ECO:0000313|EMBL:KCZ71974.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
thiC; thiamine biosynthesis protein ThiC
SR-VP_26_10_2019_2_100cm_scaffold_1376_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

8616..9368
DNA (753bp) protein (251aa)
F420-0:gamma-glutamyl ligase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L2M0_METHD
F420-0:gamma-glutamyl ligase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9449..10585
DNA (1137bp) protein (379aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1376_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10588..11181)
DNA (594bp) protein (198aa)
Glutamine amidotransferase subunit PdxT n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EB27_METMS
pyridoxal phosphate synthase yaaE subunit
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1376_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

11350..12312
DNA (963bp) protein (321aa)
Cell division protein FtsZ n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IKP2_NITGG
ftsZ2; cell division protein FtsZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(12315..13034)
DNA (720bp) protein (240aa)
Uroporphyrinogen III synthase HEM4 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMW6_METZD
uroporphyrinogen III synthase HEM4
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_14
unknown

Not on your lists

comp(13031..13291)
DNA (261bp) protein (87aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1376_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

13555..14856
DNA (1302bp) protein (434aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12X83_METBU
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_16
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14874..15533)
DNA (660bp) protein (220aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GHH6_METPE
EmrB/QacA subfamily drug resistance transporter
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ACL16581.1}; Flags: Precursor;; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
SR-VP_26_10_2019_2_100cm_scaffold_1376_trna_1
unknown

Not on your lists

comp(15660..15733)
DNA (74bp)
transferRNA Val
SR-VP_26_10_2019_2_100cm_scaffold_1376_17
unknown

Not on your lists

comp(15928..16392)
DNA (465bp) protein (155aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1376_18
unknown

Not on your lists

comp(16738..17403)
DNA (666bp) protein (222aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1376_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17855..18154
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70672.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_1376_20

Not on your lists

comp(18254..18478)
DNA (225bp) protein (75aa)
Marine sediment metagenome DNA, contig: S12H4_S04658 {ECO:0000313|EMBL:GAI90747.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein id=4577615 bin=GWC2_Syntrophobacterales_56_13 species=Oscillatoria acuminata genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_1376_21
GWA2_Nitrospirae_42_11_curated, Nitrospirae, Bacteria

Not on your lists

comp(18475..18753)
DNA (279bp) protein (93aa)
Tax=GWA2_Nitrospirae_42_11_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_22
S_OP1_64_32, KB1, Bacteria

Not on your lists

19086..19487
DNA (402bp) protein (134aa)
HEPN domain protein n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CRV6_METMJ
HEPN domain-containing protein
Tax=S_OP1_64_32
SR-VP_26_10_2019_2_100cm_scaffold_1376_23
Caldatribacterium californiense, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

19430..19789
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI000375FEC7
DNA polymerase beta domain-containing protein
Tax=Caldatribacterium californiense
SR-VP_26_10_2019_2_100cm_scaffold_1376_24
unknown

Not on your lists

19731..19907
DNA (177bp) protein (59aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1376_25
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20024..21865
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q469K6_METBF
cellulose synthase subunit BcsC
Cellulose synthase subunit BcsC {ECO:0000313|EMBL:AKB74887.1}; TaxID=1434111 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina lacustris Z-7289.;"
SR-VP_26_10_2019_2_100cm_scaffold_1376_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

21862..22710
DNA (849bp) protein (283aa)
TatD-related deoxyribonuclease n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WV0_METBU
TatD-related deoxyribonuclease
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22801..23313)
DNA (513bp) protein (171aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73566.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_1376_28
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

23433..24656
DNA (1224bp) protein (408aa)
Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=PGK_METMA
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1376_29
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

24628..25242
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M4J2_GEODF
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying items 1-30 of 34 in total

View Taxonomy