ggKbase home page

MPF_scaffold_56

Alias: MPF_Firmicutes_38_45_5

Search features with annotation key words

Displaying items 1-30 of 36 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MPF_scaffold_56_1
Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

481..768
DNA (288bp) protein (96aa)
hypothetical protein
Putative cation transporter {ECO:0000313|EMBL:EMT39667.1}; TaxID=1198630 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Therm
Putative uncharacterized protein
MPF_scaffold_56_2
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1111..2391
DNA (1281bp) protein (427aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacte
ThrA; homoserine dehydrogenase rbh
Homoserine dehydrogenase
MPF_scaffold_56_3
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

2417..3700
DNA (1284bp) protein (428aa)
MET17; O-acetylhomoserine sulfhydrylase rbh
O-acetylhomoserine sulfhydrylase {ECO:0000313|EMBL:AAM25314.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Cal
O-acetylhomoserine sulfhydrylase
MPF_scaffold_56_4
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

3713..4819
DNA (1107bp) protein (369aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF
homoserine O-acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase
MPF_scaffold_56_5
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

4945..6054
DNA (1110bp) protein (370aa)
MviM5; dehydrogenase and related proteins rbh
Dehydrogenase {ECO:0000313|EMBL:KKC29049.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subte
Predicted dehydrogenases and related proteins
MPF_scaffold_56_6
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

6073..7455
DNA (1383bp) protein (461aa)
Sun2; tRNA and rRNA cytosine-C5-methylase rbh
tRNA and rRNA cytosine-C5-methylases {ECO:0000313|EMBL:AAM25312.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source=
tRNA and rRNA cytosine-C5-methylases
MPF_scaffold_56_7
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

7559..16147
DNA (8589bp) protein (2863aa)
cyclic beta 1-2 glucan synthetase rbh
Cyclic beta 1-2 glucan synthetase {ECO:0000313|EMBL:AAM25311.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Ca
Cyclic beta 1-2 glucan synthetase
MPF_scaffold_56_8
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16212..16478)
DNA (267bp) protein (89aa)
nucleotidyltransferase
Predicted nucleotidyltransferases {ECO:0000313|EMBL:AAM25306.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Ca
Predicted nucleotidyltransferases
MPF_scaffold_56_9
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

16558..17697
DNA (1140bp) protein (380aa)
HisS2; histidyl-tRNA synthetase rbh
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Therm
ATP phosphoribosyltransferase regulatory subunit
MPF_scaffold_56_10
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

17699..18331
DNA (633bp) protein (211aa)
ATP phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01018}; Short=ATP-PRT {ECO:0000255|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000255|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000255|HAMAP-R
hisG; ATP phosphoribosyltransferase rbh
ATP phosphoribosyltransferase
MPF_scaffold_56_11
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18334..19626
DNA (1293bp) protein (431aa)
Histidinol dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01024}; Short=HDH {ECO:0000255|HAMAP-Rule:MF_01024};; EC=1.1.1.23 {ECO:0000255|HAMAP-Rule:MF_01024};; TaxID=273068 species="Bacteria; Firmicutes; Cl
hisD; histidinol dehydrogenase rbh
Histidinol dehydrogenase
MPF_scaffold_56_12
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

19619..20674
DNA (1056bp) protein (352aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
HisC2; histidinol-phosphate aminotransferase rbh
Histidinol-phosphate aminotransferase
MPF_scaffold_56_13
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

20671..21255
DNA (585bp) protein (195aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, E
hisB; imidazoleglycerol-phosphate dehydratase rbh
Imidazoleglycerol-phosphate dehydratase
MPF_scaffold_56_14
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21274..21885
DNA (612bp) protein (204aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-
hisH; imidazole glycerol phosphate synthase subunit HisH rbh
Imidazole glycerol phosphate synthase subunit HisH
MPF_scaffold_56_15
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21876..22598
DNA (723bp) protein (241aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
HisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase rbh
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
MPF_scaffold_56_16
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

22599..23360
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP
HisF; imidazole glycerol phosphate synthase subunit HisF rbh
Imidazole glycerol phosphate synthase subunit HisF
MPF_scaffold_56_17
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

23378..23995
DNA (618bp) protein (206aa)
HisI; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31) rbh
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaero
Histidine biosynthesis bifunctional protein HisIE
MPF_scaffold_56_18
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24193..26136)
DNA (1944bp) protein (648aa)
NemA3; NADH:flavin oxidoreductase rbh
NADH:flavin oxidoreductases, Old Yellow Enzyme family {ECO:0000313|EMBL:AAM25296.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaero
NADH:flavin oxidoreductases, Old Yellow Enzyme family
MPF_scaffold_56_19
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26426..27667)
DNA (1242bp) protein (414aa)
Serine hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000255|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000255|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000255|HAM
glyA; serine hydroxymethyltransferase rbh
Serine hydroxymethyltransferase
MPF_scaffold_56_20
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27941..28873)
DNA (933bp) protein (311aa)
Zn-dependent dipeptidase rbh
Renal dipeptidase superfamily protein {ECO:0000313|EMBL:EEB75610.1}; Zn-dependent dipeptidase {ECO:0000313|EMBL:KKC29028.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobactera
Zn-dependent dipeptidase, microsomal dipeptidase homolog
MPF_scaffold_56_21
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

29026..30435
DNA (1410bp) protein (470aa)
GlcNAc-PI de-N-acetylase family protein {ECO:0000313|EMBL:EEB75599.1}; Uncharacterized protein {ECO:0000313|EMBL:KKC29027.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacter
hypothetical protein rbh
GlcNAc-PI de-N-acetylase family protein
MPF_scaffold_56_22
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30442..31389)
DNA (948bp) protein (316aa)
NptA; Na+/phosphate symporter rbh
Na+/phosphate symporter {ECO:0000313|EMBL:KKC29026.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Na+/phosphate symporter
MPF_scaffold_56_23
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

31512..33848
DNA (2337bp) protein (779aa)
Nucleoside-diphosphate-sugar pyrophosphorylase {ECO:0000313|EMBL:ERM92060.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter
Gcd1.2; nucleoside-diphosphate-sugar pyrophosphorylase rbh
Nucleoside-diphosphate-sugar pyrophosphorylase
MPF_scaffold_56_24
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

33914..34255
DNA (342bp) protein (114aa)
KdpB; potassium-transporting ATPase subunit B (EC:3.6.3.12)
Potassium-transporting ATPase B chain {ECO:0000255|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000255|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000255|HAMAP-Rule:M
Potassium-transporting ATPase B chain
MPF_scaffold_56_25
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

34267..34632
DNA (366bp) protein (122aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:M
KdpC; K+-transporting ATPase subunit C
Potassium-transporting ATPase C chain
MPF_scaffold_56_26
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

34703..34990
DNA (288bp) protein (96aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKC29018.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Putative uncharacterized protein
MPF_scaffold_56_27
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

34987..35547
DNA (561bp) protein (187aa)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAM25185.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
CRISPR-associated protein Cas4
MPF_scaffold_56_28
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

35619..36500
DNA (882bp) protein (294aa)
Xylanase {ECO:0000313|EMBL:ERM92054.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterran
Cda1.3; xylanase/chitin deacetylase rbh
Predicted xylanase/chitin deacetylase
MPF_scaffold_56_29
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

36516..37244
DNA (729bp) protein (243aa)
hypothetical protein rbh
Predicted integral membrane protein {ECO:0000313|EMBL:AAM25183.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="
Predicted integral membrane protein
MPF_scaffold_56_30
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

37376..37945
DNA (570bp) protein (190aa)
GlpP; glycerol-3-phosphate responsive antiterminator (mRNA-binding) rbh
Glycerol-3-phosphate responsive antiterminator (MRNA-binding) {ECO:0000313|EMBL:AAM25182.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Ca
Glycerol-3-phosphate responsive antiterminator (MRNA-binding)
Displaying items 1-30 of 36 in total

View Taxonomy