ggKbase home page

MPF_scaffold_133

Alias: MPF_Firmicutes_38_45_16

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MPF_scaffold_133_1
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(71..664)
DNA (594bp) protein (198aa)
NemA2; NADH:flavin oxidoreductase
NADH:flavin oxidoreductases, Old Yellow Enzyme family {ECO:0000313|EMBL:AAM24243.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaero
NADH:flavin oxidoreductases, Old Yellow Enzyme family
MPF_scaffold_133_2
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

819..1652
DNA (834bp) protein (278aa)
LysR2; transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:AAM24242.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaero
Transcriptional regulator
MPF_scaffold_133_3
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1778..2284
DNA (507bp) protein (169aa)
ThiJ; intracellular protease/amidase rbh
Putative intracellular protease/amidase {ECO:0000313|EMBL:AAM24241.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" sour
Putative intracellular protease/amidase
MPF_scaffold_133_4
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3000..3563)
DNA (564bp) protein (188aa)
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldana
smpB; SsrA-binding protein rbh
SsrA-binding protein
MPF_scaffold_133_5
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3586..4437)
DNA (852bp) protein (284aa)
Rad55; signal transduction ATPase rbh
RecA-superfamily ATPases implicated in signal transduction {ECO:0000313|EMBL:AAM24239.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Calda
RecA-superfamily ATPases implicated in signal transduction
MPF_scaffold_133_6
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4484..6610)
DNA (2127bp) protein (709aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=273068 species="Bacteria; Firmicutes; Clostrid
VacB; exoribonuclease rbh
Ribonuclease R
MPF_scaffold_133_7
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6624..7175)
DNA (552bp) protein (184aa)
HD superfamily hydrolase rbh
Predicted HD superfamily hydrolase {ECO:0000313|EMBL:AAM24237.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="C
Predicted HD superfamily hydrolase
MPF_scaffold_133_8
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7275..9902)
DNA (2628bp) protein (876aa)
PpsA2; pyruvate phosphate dikinase (EC:2.7.9.1) rbh
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase {ECO:0000313|EMBL:AAM24236.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldana
Pyruvate, phosphate dikinase
MPF_scaffold_133_9
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9899..10711)
DNA (813bp) protein (271aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000255|HAMAP-Rule:MF_00
hypothetical protein rbh
Putative pyruvate, phosphate dikinase regulatory protein
MPF_scaffold_133_10
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10723..11382)
DNA (660bp) protein (220aa)
hypothetical protein rbh
CBS domains {ECO:0000313|EMBL:AAM24234.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterr
CBS domains
MPF_scaffold_133_11
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11498..12883)
DNA (1386bp) protein (462aa)
GRS1; glycyl-tRNA synthetase (EC:6.1.1.14) rbh
Glycine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00253}; EC=6.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00253};; Glycyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00253}; Short=GlyRS {ECO:0000255|HAMAP-Rule:MF
Glycine--tRNA ligase
MPF_scaffold_133_12
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12987..13397)
DNA (411bp) protein (137aa)
Ubiquitin-associated-domain-containing protein {ECO:0000313|EMBL:ERM92084.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter
hypothetical protein
Putative uncharacterized protein
MPF_scaffold_133_13
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13415..14158)
DNA (744bp) protein (248aa)
RecO; recombinational DNA repair protein rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1388761 species="Bacteria; Firmicutes; Clostr
DNA repair protein RecO
MPF_scaffold_133_14
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14164..14835)
DNA (672bp) protein (224aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256
DeoC; deoxyribose-phosphate aldolase rbh
Deoxyribose-phosphate aldolase
MPF_scaffold_133_15
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14890..15786)
DNA (897bp) protein (299aa)
era; GTP-binding protein Era rbh
GTPase Era {ECO:0000255|HAMAP-Rule:MF_00367}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subt
GTPase Era
MPF_scaffold_133_16
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15802..16500)
DNA (699bp) protein (233aa)
DgkA; diacylglycerol kinase rbh
Diacylglycerol kinase {ECO:0000313|EMBL:AAM24228.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobact
Diacylglycerol kinase
MPF_scaffold_133_17
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16505..16981)
DNA (477bp) protein (159aa)
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobact
metalloprotease rbh
Endoribonuclease YbeY
MPF_scaffold_133_18
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16978..19041)
DNA (2064bp) protein (688aa)
7TM-HD extracellular domain protein {ECO:0000313|EMBL:EEB75112.1}; HD superfamily hydrolase {ECO:0000313|EMBL:KKC29997.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterale
HD superfamily hydrolase rbh
Predicted membrane-associated HD superfamily hydrolase
MPF_scaffold_133_19
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19046..20038)
DNA (993bp) protein (331aa)
Phosphate starvation protein PhoH {ECO:0000313|EMBL:ERM92078.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="C
PhoH; phosphate starvation-inducible protein PhoH, ATPase rbh
Phosphate starvation-inducible protein PhoH, predicted ATPase
MPF_scaffold_133_20
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20031..21245)
DNA (1215bp) protein (405aa)
Stage IV sporulation protein {ECO:0000313|EMBL:ERM92077.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldan
stage IV sporulation protein rbh
Stage IV sporulation protein
MPF_scaffold_133_21
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21242..21511)
DNA (270bp) protein (90aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC29994.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
hypothetical protein
Putative uncharacterized protein
MPF_scaffold_133_22
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21651..22628
DNA (978bp) protein (326aa)
AnsB; L-asparaginase/Glu-tRNAGln amidotransferase subunit D rbh
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D {ECO:0000313|EMBL:AAM24222.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; C
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D
MPF_scaffold_133_23
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22660..23106)
DNA (447bp) protein (149aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKC29990.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Putative uncharacterized protein
MPF_scaffold_133_24
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23422..23766)
DNA (345bp) protein (115aa)
Hit; diadenosine tetraphosphate hydrolase
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases {ECO:0000313|EMBL:AAM24219.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerob
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
MPF_scaffold_133_25
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23801..25114)
DNA (1314bp) protein (438aa)
2-methylthioadenine synthetase {ECO:0000313|EMBL:KKC29988.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Calda
MiaB; 2-methylthioadenine synthetase rbh
2-methylthioadenine synthetase
MPF_scaffold_133_26
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

25273..25524
DNA (252bp) protein (84aa)
PorB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit {ECO:0000313|EMBL:AAM24216.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobac
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
MPF_scaffold_133_27
Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

25579..26250
DNA (672bp) protein (224aa)
Putative site-specific integrase-resolvase {ECO:0000313|EMBL:EMT40013.1}; TaxID=1198630 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;
resolvase, N-terminal domain-containing protein rbh
Resolvase, N-terminal domain containing protein
MPF_scaffold_133_28
Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

26207..27403
DNA (1197bp) protein (399aa)
Transposase, IS605 OrfB family, central region {ECO:0000313|EMBL:EMT39613.1}; TaxID=1198630 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobact
transposase rbh
Predicted transposase
MPF_scaffold_133_29
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

27534..27740
DNA (207bp) protein (69aa)
PorB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta
2-oxoglutarate ferredoxin oxidoreductase subunit beta {ECO:0000313|EMBL:KKC29986.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaero
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
Displaying 29 items

View Taxonomy