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MPF_scaffold_284

Alias: MPF_Firmicutes_38_45_32

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MPF_scaffold_284_1
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..945
DNA (945bp) protein (315aa)
Copper amine oxidase {ECO:0000313|EMBL:ERM92135.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobact
hypothetical protein rbh
Copper amine oxidase N-terminal domain family
MPF_scaffold_284_2
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1018..1434)
DNA (417bp) protein (139aa)
IscU; Fe-S cluster formation protein NifU
NifU homologs involved in Fe-S cluster formation {ECO:0000313|EMBL:KKC28655.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacte
NifU homologs involved in Fe-S cluster formation
MPF_scaffold_284_3
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1431..2654)
DNA (1224bp) protein (408aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1388761 species="Bacteria; Firmic
CsdB; selenocysteine lyase rbh
Cysteine desulfurase
MPF_scaffold_284_4
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2654..3691)
DNA (1038bp) protein (346aa)
iron-regulated ABC-type transporter permease rbh
Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufB {ECO:0000313|EMBL:AAM25790.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacteral
Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufB
MPF_scaffold_284_5
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3703..5106)
DNA (1404bp) protein (468aa)
iron-regulated ABC-type transporter permease rbh
Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufB {ECO:0000313|EMBL:AAM25791.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacteral
Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufB
MPF_scaffold_284_6
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5126..5872)
DNA (747bp) protein (249aa)
Iron-regulated ABC transporter ATPase subunit SufC rbh
Iron-regulated ABC transporter ATPase subunit SufC {ECO:0000313|EMBL:AAM25792.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobac
Iron-regulated ABC transporter ATPase subunit SufC
MPF_scaffold_284_7
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6059..6340)
DNA (282bp) protein (94aa)
GroS2; Co-chaperonin GroES (HSP10)
10 kDa chaperonin {ECO:0000256|RuleBase:RU000535}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter
10 kDa chaperonin
MPF_scaffold_284_8
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6395..7012)
DNA (618bp) protein (206aa)
Glutaredoxin {ECO:0000313|EMBL:ERM92140.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subte
GrxC; glutaredoxin-like protein rbh
Glutaredoxin and related proteins
MPF_scaffold_284_9
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7243..8247)
DNA (1005bp) protein (335aa)
SplB; DNA repair photolyase rbh
DNA repair photolyase {ECO:0000313|EMBL:AAM25796.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobact
DNA repair photolyase
MPF_scaffold_284_10
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8219..9034)
DNA (816bp) protein (272aa)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAM25797.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Putative uncharacterized protein
MPF_scaffold_284_11
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9042..10322)
DNA (1281bp) protein (427aa)
TyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1) rbh
Tyrosine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02006}; EC=6.1.1.1 {ECO:0000255|HAMAP-Rule:MF_02006};; Tyrosyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02006}; Short=TyrRS {ECO:0000255|HAMAP-Rule:M
Tyrosine--tRNA ligase
MPF_scaffold_284_12
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10370..10771
DNA (402bp) protein (134aa)
Ribosomal RNA large subunit methyltransferase H 1 {ECO:0000255|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000255|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000255|HAM
hypothetical protein
Ribosomal RNA large subunit methyltransferase H 1
MPF_scaffold_284_13
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10773..11219)
DNA (447bp) protein (149aa)
Ribosomal RNA large subunit methyltransferase H 2 {ECO:0000255|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000255|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000255|HAM
rRNA large subunit methyltransferase
Ribosomal RNA large subunit methyltransferase H 2
MPF_scaffold_284_14
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11234..11428)
DNA (195bp) protein (65aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM25801.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Uncharacterized protein
MPF_scaffold_284_15
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11468..12571)
DNA (1104bp) protein (368aa)
DegQ3; serine protease rbh
Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain {ECO:0000313|EMBL:AAM25802.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermo
Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain
MPF_scaffold_284_16
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12632..13885)
DNA (1254bp) protein (418aa)
MurA3; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7) rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3
MPF_scaffold_284_17
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14023..14859)
DNA (837bp) protein (279aa)
Uncharacterized protein {ECO:0000313|EMBL:ERM90896.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerob
hypothetical protein rbh
Putative uncharacterized protein
MPF_scaffold_284_18
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14856..16076)
DNA (1221bp) protein (407aa)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAM25805.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Putative uncharacterized protein
MPF_scaffold_284_19
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16090..16485)
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC28573.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
hypothetical protein
Putative uncharacterized protein
MPF_scaffold_284_20
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16566..17729)
DNA (1164bp) protein (388aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae;
BaeS12; sensory transduction histidine kinase rbh
Sensory transduction histidine kinases
Displaying 20 items

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