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MPI_scaffold_235

Alias: MPI_Clostridia_34_121_5

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MPI_scaffold_235_1

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395..1735
DNA (1341bp) protein (447aa)
rimO; Ribosomal protein S12 methylthiotransferase (EC:2.-.-.-)
Marine sediment metagenome DNA, contig: S01H4_C00168 {ECO:0000313|EMBL:GAG66424.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Ribosomal protein S12 methylthiotransferase RimO
MPI_scaffold_235_2

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1766..2851
DNA (1086bp) protein (362aa)
Marine sediment metagenome DNA, contig: S01H4_C00168 {ECO:0000313|EMBL:GAG66435.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
pepP; aminopeptidase
Aminopeptidase P
MPI_scaffold_235_3

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2915..4141
DNA (1227bp) protein (409aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Marine sediment metagenome DNA, contig: S01H4_C01751 {ECO:0000313|EMBL:GAG72963.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Serine hydroxymethyltransferase
MPI_scaffold_235_4
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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4172..4729
DNA (558bp) protein (186aa)
translation elongation factor P; K02356 elongation factor P Tax=RBG_19FT_COMBO_JS1_35_14_curated
translation elongation factor P
Elongation factor P
MPI_scaffold_235_5

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4867..5292
DNA (426bp) protein (142aa)
Marine sediment metagenome DNA, contig: S01H4_C01011 {ECO:0000313|EMBL:GAG60432.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
Putative uncharacterized protein
MPI_scaffold_235_6

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5318..5740
DNA (423bp) protein (141aa)
Marine sediment metagenome DNA, contig: S06H3_S14833 {ECO:0000313|EMBL:GAI43990.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
NusB antitermination factor
NusB antitermination factor; K03625 N utilization substance protein B alias=ACD73_C00278G00010,ACD73_2549.8465.6G0010,ACD73_2549.8465.6_10 id=109835 tax=ACD73 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_desc=Unknown
MPI_scaffold_235_7
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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5747..6976
DNA (1230bp) protein (410aa)
exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RBG_19FT_COMBO_JS1_35_14_curated
exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit
MPI_scaffold_235_8

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6973..7242
DNA (270bp) protein (90aa)
Marine sediment metagenome DNA, contig: S01H4_C01494 {ECO:0000313|EMBL:GAG69941.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
exodeoxyribonuclease VII, small subunit
Exodeoxyribonuclease VII, small subunit
MPI_scaffold_235_9

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7232..8092
DNA (861bp) protein (287aa)
Marine sediment metagenome DNA, contig: S12H4_C01664 {ECO:0000313|EMBL:GAI62310.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
trans-isoprenyl diphosphate synthase
Trans-isoprenyl diphosphate synthase
MPI_scaffold_235_10
unknown

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8089..8241
DNA (153bp) protein (51aa)
MPI_scaffold_235_11

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8371..9096
DNA (726bp) protein (242aa)
ribonuclease PH (EC:2.7.7.56)
Marine sediment metagenome DNA, contig: S01H4_L00684 {ECO:0000313|EMBL:GAG63517.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Ribonuclease PH
MPI_scaffold_235_12

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9090..9677
DNA (588bp) protein (196aa)
Marine sediment metagenome DNA, contig: S01H4_L00684 {ECO:0000313|EMBL:GAG63519.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
Non-canonical purine NTP pyrophosphatase
MPI_scaffold_235_13
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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11171..12487
DNA (1317bp) protein (439aa)
trigger factor; K03545 trigger factor Tax=RBG_19FT_COMBO_JS1_35_14_curated
trigger factor
Trigger factor
MPI_scaffold_235_14
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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12484..13080
DNA (597bp) protein (199aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RBG_19FT_COMBO_JS1_35_14_curated
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit
MPI_scaffold_235_15

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13171..13530
DNA (360bp) protein (120aa)
Marine sediment metagenome DNA, contig: S06H3_C03778 {ECO:0000313|EMBL:GAI11593.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
Putative uncharacterized protein
MPI_scaffold_235_16
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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13571..14851
DNA (1281bp) protein (427aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease, ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RBG_19FT_COMBO_JS1_35_14_curated
ATP-dependent Clp protease ATP-binding subunit ClpX
MPI_scaffold_235_17
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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14970..17318
DNA (2349bp) protein (783aa)
anti-sigma H sporulation factor LonB (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RBG_19FT_COMBO_JS1_35_14_curated
ATP-dependent protease La (EC:3.4.21.53)
Lon protease
MPI_scaffold_235_18
CG_OP9-01, Atribacteria, Bacteria

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18068..20734
DNA (2667bp) protein (889aa)
valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=CG_OP9-01
valyl-tRNA synthetase
Valine--tRNA ligase
MPI_scaffold_235_19

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21050..22369
DNA (1320bp) protein (440aa)
Marine sediment metagenome DNA, contig: S01H4_C00679 {ECO:0000313|EMBL:GAG74234.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
FolC bifunctional protein
FolC bifunctional protein
MPI_scaffold_235_20

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22716..23357
DNA (642bp) protein (214aa)
Marine sediment metagenome DNA, contig: S01H4_C04857 {ECO:0000313|EMBL:GAG57850.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
competence protein ComEA
Competence protein ComEA helix-hairpin-helix repeat protein
MPI_scaffold_235_21
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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23345..25750
DNA (2406bp) protein (802aa)
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=RBG_19FT_COMBO_JS1_35_14_curated
DNA internalization-related competence protein ComEC/Rec2
DNA internalization-related competence protein ComEC/Rec2
MPI_scaffold_235_22

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25770..26783
DNA (1014bp) protein (338aa)
Marine sediment metagenome DNA, contig: S01H4_C01172 {ECO:0000313|EMBL:GAG63773.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
DNA polymerase III subunit delta
DNA polymerase III, delta subunit
MPI_scaffold_235_23
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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comp(27163..27711)
DNA (549bp) protein (183aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RBG_19FT_COMBO_JS1_35_14_curated
30S ribosomal protein S20
30S ribosomal protein S20
Displaying 23 items

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