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MPI_scaffold_210

Alias: MPI_JS1_34_150_partial_33

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MPI_scaffold_210_1

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comp(185..607)
DNA (423bp) protein (141aa)
Marine sediment metagenome DNA, contig: S01H1_L00477 {ECO:0000313|EMBL:GAF83947.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Putative uncharacterized protein
MPI_scaffold_210_2

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comp(718..1434)
DNA (717bp) protein (239aa)
Marine sediment metagenome DNA, contig: S01H1_C01462 {ECO:0000313|EMBL:GAF72155.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
SigF
SigF
MPI_scaffold_210_3

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comp(1455..2168)
DNA (714bp) protein (238aa)
Marine sediment metagenome DNA, contig: S01H4_C00107 {ECO:0000313|EMBL:GAG64575.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
SigF
SigF
MPI_scaffold_210_4
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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comp(2291..3502)
DNA (1212bp) protein (404aa)
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=RBG_19FT_COMBO_JS1_35_14_curated
pilC; type IV pilus inner membrane protein PilC
Type IV pilus inner membrane protein PilC
MPI_scaffold_210_5

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comp(3831..4895)
DNA (1065bp) protein (355aa)
Marine sediment metagenome DNA, contig: S03H2_C00867 {ECO:0000313|EMBL:GAH26005.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
metal dependent phosphohydrolase
Metal dependent phosphohydrolase
MPI_scaffold_210_6
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

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comp(4963..6687)
DNA (1725bp) protein (575aa)
type II secretion system protein E (GspE); K02652 type IV pilus assembly protein PilB Tax=RBG_13_Actinobacteria_35_12_curated
type II secretion system protein E (GspE)
General secretory pathway protein E
MPI_scaffold_210_7
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(6719..7477)
DNA (759bp) protein (253aa)
hypothetical protein Tax=RBG_13_Actinobacteria_35_12_curated
hypothetical protein
Putative uncharacterized protein
MPI_scaffold_210_8
CG_OP9-01, Atribacteria, Bacteria

Not on your lists


comp(7733..8014)
DNA (282bp) protein (94aa)
30S ribosomal protein S23 Tax=CG_OP9-01
30S ribosomal protein S23
S23 ribosomal protein
MPI_scaffold_210_9

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comp(8085..8696)
DNA (612bp) protein (204aa)
Marine sediment metagenome DNA, contig: S03H2_S04014 {ECO:0000313|EMBL:GAH49241.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
HAD superfamily (Subfamily IIIA) phosphatase, TIGR01668
MPI_scaffold_210_10

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comp(8729..9340)
DNA (612bp) protein (204aa)
Marine sediment metagenome DNA, contig: S03H2_S11246 {ECO:0000313|EMBL:GAH75848.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
uridine kinase
Uridine kinase
MPI_scaffold_210_11

Not on your lists

comp(9397..10350)
DNA (954bp) protein (318aa)
Marine sediment metagenome DNA, contig: S01H1_L03315 {ECO:0000313|EMBL:GAF68929.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
periplasmic solute-binding protein
Predicted periplasmic solute-binding protein
MPI_scaffold_210_12

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comp(10347..10796)
DNA (450bp) protein (150aa)
Marine sediment metagenome DNA, contig: S12H4_L06247 {ECO:0000313|EMBL:GAI81851.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
RNAse H-fold protein YqgF
Putative Holliday junction resolvase
MPI_scaffold_210_13

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comp(10917..11339)
DNA (423bp) protein (141aa)
Marine sediment metagenome DNA, contig: S06H3_L02082 {ECO:0000313|EMBL:GAI13182.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
30S ribosomal protein S23
S23 ribosomal protein
MPI_scaffold_210_14
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists


comp(11352..14048)
DNA (2697bp) protein (899aa)
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RBG_19FT_COMBO_JS1_35_14_curated
alanyl-tRNA synthetase
Alanine--tRNA ligase
MPI_scaffold_210_15

Not on your lists

comp(14174..14497)
DNA (324bp) protein (108aa)
Marine sediment metagenome DNA, contig: S01H4_C01293 {ECO:0000313|EMBL:GAG66171.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
excinuclease ABC subunit C
Excinuclease ABC C subunit domain protein
MPI_scaffold_210_16
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists

comp(14623..16338)
DNA (1716bp) protein (572aa)
type II secretion system protein E (GspE); K02652 type IV pilus assembly protein PilB Tax=RBG_19FT_COMBO_JS1_35_14_curated
type II secretion system protein E (GspE)
Type II secretion system protein E (GspE)
MPI_scaffold_210_17
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(16718..18706)
DNA (1989bp) protein (663aa)
30S ribosomal protein S1 Tax=RBG_13_Actinobacteria_35_12_curated
30S ribosomal protein S1
30S ribosomal protein S1
MPI_scaffold_210_18

Not on your lists

comp(19003..19596)
DNA (594bp) protein (198aa)
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
Marine sediment metagenome DNA, contig: S01H1_S38173 {ECO:0000313|EMBL:GAG47260.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
5-formyltetrahydrofolate cyclo-ligase
MPI_scaffold_210_19
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists


comp(20599..22410)
DNA (1812bp) protein (604aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=RBG_19FT_COMBO_JS1_35_14_curated
aspartyl-tRNA synthetase
Aspartate--tRNA ligase
MPI_scaffold_210_20

Not on your lists

comp(22827..24122)
DNA (1296bp) protein (432aa)
Marine sediment metagenome DNA, contig: S01H4_C00499 {ECO:0000313|EMBL:GAG73005.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
asparaginyl-tRNA synthetase
Asparagine--tRNA ligase
MPI_scaffold_210_21

Not on your lists


comp(24238..25491)
DNA (1254bp) protein (418aa)
Marine sediment metagenome DNA, contig: S01H4_C00499 {ECO:0000313|EMBL:GAG73006.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
histidyl-tRNA synthetase
Histidine--tRNA ligase
MPI_scaffold_210_22
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists

comp(25593..26654)
DNA (1062bp) protein (354aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RBG_19FT_COMBO_JS1_35_14_curated
twitching motility protein
Twitching motility protein
MPI_scaffold_210_23

Not on your lists

comp(26709..27170)
DNA (462bp) protein (154aa)
Marine sediment metagenome DNA, contig: S12H4_L03984 {ECO:0000313|EMBL:GAI86119.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
Uncharacterized protein
MPI_scaffold_210_24
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists

comp(27758..28822)
DNA (1065bp) protein (355aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RBG_19FT_COMBO_JS1_35_14_curated
twitching motility protein
Twitching motility protein
Displaying 24 items

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