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MPI_Proteobacteria_55_5_partial

MPI_Deltaproteobacteria_54_5
In projects: mpi

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: MPI_UNK

Properties

Avg. coverage: 5.47 Longest contig: 14.95 Kbp Bin length: 359.00 Kbp GC content: 53.78 %
Contigs count: 109 Features count: 460 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 17 / 55 BSCG 16 / 51 ASCG 0 / 38
Displaying items 1-50 of 109 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
MPI_scaffold_725 MPI_Deltaproteo_55_6_plus_1
Class: Deltaproteobacteria (81.82%)
22 14954 bp 56.68 6.49 90.96
MPI_scaffold_1343 MPI_Deltaproteo_55_6_plus_2
Class: Deltaproteobacteria (60%)
10 10099 bp 57.92 5.50 88.23
MPI_scaffold_2911 MPI_nov_test_55_6_188
Domain: Bacteria (80%)
10 5936 bp 56.97 5.77 78.79
MPI_scaffold_2490 MPI_UNK_1781 10 6618 bp 56.38 8.39 95.92
MPI_scaffold_6645 MPI_nov_test_55_6_227
Class: Deltaproteobacteria (62.5%)
8 6402 bp 60.81 6.05 99.06
MPI_scaffold_3911 MPI_new_49_70_29
Genus: Smithella (50%)
8 4788 bp 46.39 4.39 83.33
MPI_scaffold_2487 MPI_new_49_10_3
Class: Deltaproteobacteria (62.5%)
8 6629 bp 48.09 5.32 82.14
MPI_scaffold_3026 MPI_nov_test_55_6_190
Phylum: Proteobacteria (62.5%)
8 5784 bp 56.67 5.23 78.68
MPI_scaffold_5636 MPI_nov_test_55_6_214
Phylum: Proteobacteria (57.14%)
7 3699 bp 54.12 7.10 81.35
MPI_scaffold_8296 MPI_UNK_1922
Phylum: Proteobacteria (71.43%)
7 2834 bp 56.39 6.35 76.11
MPI_scaffold_8697 MPI_Deltaproteo_55_6_plus_157
Class: Deltaproteobacteria (67%)
6 3112 bp 56.20 5.86 84.83
MPI_scaffold_3883 MPI_Deltaproteo_55_6_plus_25
Class: Deltaproteobacteria (50%)
6 4809 bp 56.08 5.30 81.22
MPI_scaffold_5184 MPI_UNK_1834
Class: Methanomicrobia (50%)
6 3926 bp 49.16 5.86 89.63
MPI_scaffold_10065 MPI_UNK_1842
Domain: Bacteria (66.67%)
6 3773 bp 59.71 4.77 79.11
MPI_scaffold_6996 MPI_Deltaproteo_55_6_plus_140
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (100%)
6 3200 bp 50.19 4.69 90.09
MPI_scaffold_3170 MPI_Deltaproteo_55_6_plus_16
Class: Deltaproteobacteria (66.67%)
6 5592 bp 56.72 5.54 90.93
MPI_scaffold_3693 MPI_new_49_10_6
Species: CG_Delta_05 (50%)
6 4986 bp 49.78 5.42 85.80
MPI_scaffold_6571 MPI_Deltaproteo_55_6_plus_118
Order: Syntrophobacterales (66.67%)
6 3333 bp 49.83 5.40 95.32
MPI_scaffold_6077 MPI_Deltaproteo_55_6_plus_20
Species: Smithella sp. F21 (83.33%)
6 5206 bp 50.58 4.03 81.71
MPI_scaffold_8131 MPI_nov_test_55_6_250
Class: Deltaproteobacteria (50%)
6 2874 bp 57.10 5.74 86.95
MPI_scaffold_3782 MPI_Deltaproteo_55_6_plus_24
Class: Deltaproteobacteria (50%)
6 4893 bp 47.70 4.50 79.58
MPI_scaffold_3555 MPI_nov_test_55_6_195
Phylum: Proteobacteria (60%)
5 5132 bp 58.01 5.26 90.61
MPI_scaffold_6430 MPI_new_44_37_206
Domain: Bacteria (60%)
5 3382 bp 46.69 4.58 59.34
MPI_scaffold_4660 MPI_new_49_10_15
Species: CG_Syntroph_01 (60%)
5 4216 bp 48.62 5.63 91.30
MPI_scaffold_8262 MPI_new_49_10_67
Class: Deltaproteobacteria (100%)
5 2841 bp 46.88 4.58 80.99
MPI_scaffold_10376 MPI_UNK_2013
Class: Deltaproteobacteria (60%)
5 2423 bp 58.27 4.95 80.97
MPI_scaffold_6810 MPI_nov_test_55_6_233
Class: Deltaproteobacteria (100%)
5 3255 bp 55.48 5.38 98.80
MPI_scaffold_6827 MPI_new_49_10_48
Order: Syntrophobacterales (80%)
5 3251 bp 53.52 5.08 92.65
MPI_scaffold_2997 MPI_nov_test_55_6_189
Class: Deltaproteobacteria (80%)
5 5813 bp 59.04 6.19 82.42
MPI_scaffold_6095 MPI_new_49_10_36
Domain: Bacteria (100%)
5 3517 bp 53.43 4.41 87.35
MPI_scaffold_7644 MPI_new_49_70_47
Class: Deltaproteobacteria (75%)
4 2998 bp 48.77 5.42 90.36
MPI_scaffold_6881 MPI_nov_test_55_6_234
Class: Deltaproteobacteria (50%)
4 3233 bp 56.26 7.11 96.13
MPI_scaffold_8673 MPI_nov_test_55_6_259
Order: Syntrophobacterales (75%)
4 2742 bp 52.33 6.93 85.67
MPI_scaffold_7918 MPI_Deltaproteo_55_6_plus_186
Class: Deltaproteobacteria (50%)
4 2928 bp 52.94 4.78 82.89
MPI_scaffold_9236 MPI_new_49_10_87
Class: Deltaproteobacteria (50%)
4 2617 bp 56.82 5.25 90.79
MPI_scaffold_5667 MPI_Deltaproteo_55_6_plus_77
Domain: Bacteria (75%)
4 3686 bp 57.08 5.22 89.77
MPI_scaffold_6950 MPI_new_49_70_42
Class: Gammaproteobacteria (50%)
4 3211 bp 50.05 5.29 99.03
MPI_scaffold_10539 MPI_UNK_1431b
Species: GWA2_Deltaproteobacteria_55_10_curated (50%)
4 2400 bp 57.58 5.83 99.50
MPI_scaffold_7988 MPI_nov_test_55_6_247
Species: CG_Nitrosp_02 (50%)
4 2911 bp 58.26 6.18 98.94
MPI_scaffold_8764 MPI_new_49_10_80
Order: Syntrophobacterales (50%)
4 2721 bp 46.89 4.59 85.23
MPI_scaffold_8255 MPI_Deltaproteo_55_6_plus_205
Class: Deltaproteobacteria (50%)
4 2843 bp 60.99 5.28 98.35
MPI_scaffold_10815 MPI_UNK_1459a
Class: Deltaproteobacteria (50%)
4 2359 bp 57.23 5.93 84.57
MPI_scaffold_10563 MPI_new_44_37_488
Class: Deltaproteobacteria (50%)
4 2397 bp 47.93 5.21 84.11
MPI_scaffold_10053 MPI_UNK_1994
Class: Deltaproteobacteria (50%)
4 2472 bp 59.67 7.08 99.51
MPI_scaffold_6731 MPI_nov_test_55_6_231
Class: Deltaproteobacteria (50%)
4 3280 bp 58.41 6.02 87.35
MPI_scaffold_8267 MPI_new_49_10_68
Phylum: Proteobacteria (75%)
4 2840 bp 47.43 4.93 92.64
MPI_scaffold_5200 MPI_new_44_37_140
Phylum: Proteobacteria (50%)
4 3916 bp 48.01 6.06 99.67
MPI_scaffold_7766 MPI_Deltaproteo_55_6_plus_178
Species: uncultured Desulfobacterium sp. (50%)
4 2965 bp 58.28 5.23 97.54
MPI_scaffold_10074 MPI_nov_test_55_6_283
Class: Deltaproteobacteria (50%)
4 3753 bp 54.09 4.73 76.66
MPI_scaffold_4191 MPI_new_59_14_17
Class: Deltaproteobacteria (50%)
4 4552 bp 56.02 6.15 73.15
Displaying items 1-50 of 109 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.