ggKbase home page

GCF_000373245_6

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GCF_000373245_6_1
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3..1019)
DNA (1017bp) protein (339aa)
hypothetical protein, partial n=1 Tax=Echinicola pacifica RepID=UPI00036DAA45
transposase IS66
Transposase IS66 {ECO:0000313|EMBL:AEL23897.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
GCF_000373245_6_2
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1019..1312)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000374FFAC
Uncharacterized protein {ECO:0000313|EMBL:ERM81680.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
GCF_000373245_6_3
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1322..1663)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003779826
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADB37670.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
GCF_000373245_6_4
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1773..2150
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BWN7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERM81026.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
insC; transposase insC for insertion element IS2A/D/F/H/I/K
GCF_000373245_6_5
Buttiauxella agrestis, Buttiauxella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2304..2564
DNA (261bp) protein (87aa)
hypothetical protein, partial n=1 Tax=Echinicola pacifica RepID=UPI000375B0EE
insertion element IS2 transposase InsD
Transposase {ECO:0000313|EMBL:KFC76688.1}; TaxID=1006004 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buttiauxella.;" source="Buttiauxella agrestis ATCC 33320.;"
GCF_000373245_6_6
unknown

Not on your lists

comp(2945..3085)
DNA (141bp) protein (47aa)

This feature has no annotations

GCF_000373245_6_7
unknown

Not on your lists

3475..3642
DNA (168bp) protein (56aa)

This feature has no annotations

GCF_000373245_6_8
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3569..4966)
DNA (1398bp) protein (466aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037649D0
signal transduction histidine kinase
GCF_000373245_6_9
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4963..5631)
DNA (669bp) protein (223aa)
PhoB family transcriptional regulator n=1 Tax=Echinicola pacifica RepID=UPI00036FB4F9
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGA80405.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_10
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5757..6917)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037A322B
RND family efflux transporter MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGA80406.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_11
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6922..11253)
DNA (4332bp) protein (1444aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000381C222
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGA80407.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
heavy metal efflux pump
GCF_000373245_6_12
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11793..12962)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037FEBB2
signal peptide protein
Tax=GWF2_Bacteroidetes_49_14_curated
GCF_000373245_6_13
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13046..14749)
DNA (1704bp) protein (568aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003774F55
choline dehydrogenase-like flavoprotein
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:AGA77705.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_14
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15075..15959
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003744062
DNA-binding domain-containing protein
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:AGA79755.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_15
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16019..17794)
DNA (1776bp) protein (592aa)
sulfatase (EC:3.1.6.-)
Sulfatase, family S1-17 {ECO:0000313|EMBL:CAZ97607.1}; EC=3.1.6.- {ECO:0000313|EMBL:CAZ97607.1};; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00035F6B85
GCF_000373245_6_16
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17802..20255)
DNA (2454bp) protein (818aa)
beta-galactosidase (EC:3.2.1.23)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000377754B
Beta-galactosidase {ECO:0000313|EMBL:GAF02256.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
GCF_000373245_6_17
Bacteroides coprophilus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20776..22350
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000376FD31
Cellulase (Glycosyl hydrolase family 5) {ECO:0000313|EMBL:EEF75408.1}; TaxID=547042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprophilus DSM 18228 = JCM 13818.;"
glycoside hydrolase family protein
GCF_000373245_6_18
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23016..23384
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003690E10
transcription elongation factor
Transcription elongation factor {ECO:0000313|EMBL:AGA80456.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_19
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23627..26503
DNA (2877bp) protein (959aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00035FD93D
response regulator receiver domain-containing protein
Response regulator receiver domain-containing protein {ECO:0000313|EMBL:BAP57979.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
GCF_000373245_6_20
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26693..29773
DNA (3081bp) protein (1027aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00036492EB
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA78938.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_21
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29780..30154
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00036F5AE6
response regulator containing a CheY-like receiver domain and an HD-GYP domain
Response regulator containing a CheY-like receiver domain and an HD-GYP domain {ECO:0000313|EMBL:AGA80562.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_22

Not on your lists

30554..31585
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000380EC31
Uncharacterized protein {ECO:0000313|EMBL:KKN42627.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NHL repeat containing protein
GCF_000373245_6_23
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

31598..33904
DNA (2307bp) protein (769aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003812DE8
Probable chromosome segregation protein {ECO:0000313|EMBL:EDM26384.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
hypothetical protein
GCF_000373245_6_24
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33912..35408
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037901C1
Uncharacterized protein {ECO:0000313|EMBL:EON77450.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
GCF_000373245_6_25
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

35433..36818
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037398B2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL28644.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
GCF_000373245_6_26
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(36837..37568)
DNA (732bp) protein (244aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
RNA pseudouridine synthase n=1 Tax=Echinicola pacifica RepID=UPI00037B6E9C
pseudouridine synthase family protein
GCF_000373245_6_27
Algoriphagus machipongonensis, Algoriphagus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(38212..39735)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000377695C
Uncharacterized protein {ECO:0000313|EMBL:EAZ81625.1}; TaxID=388413 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Algoriphagus.;" source="Algoriphagus machipongonensis.;"
hypothetical protein
GCF_000373245_6_28
Algoriphagus machipongonensis, Algoriphagus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(39754..42843)
DNA (3090bp) protein (1030aa)
membrane protein n=1 Tax=Echinicola pacifica RepID=UPI000375EA25
Putative surface membrane protein {ECO:0000313|EMBL:EAZ81626.1}; TaxID=388413 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Algoriphagus.;" source="Algoriphagus machipongonensis.;"
TonB-dependent receptor
GCF_000373245_6_29
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(43683..45497)
DNA (1815bp) protein (605aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037F001C
alkaline phosphatase
Alkaline phosphatase {ECO:0000313|EMBL:AGA78872.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_6_30
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(45926..47473)
DNA (1548bp) protein (516aa)
carbohydrate-binding protein SusD n=1 Tax=Echinicola pacifica RepID=UPI00036E370D
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEL25038.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
Displaying items 1-30 of 45 in total

View Taxonomy