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RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_1
R_WOR_2_45_21, WOR-2, Bacteria

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1..90
DNA (90bp) protein (30aa)
id=4012484 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
id=4012484 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_2
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

100..624
DNA (525bp) protein (175aa)
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_3
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

624..1046
DNA (423bp) protein (141aa)
id=4012485 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
id=4012485 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_4
R_WOR_2_45_21, WOR-2, Bacteria

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1015..2595
DNA (1581bp) protein (527aa)
type II secretion system [rpteom; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Putatively involved in type II secretion system id=4012486 bin=GWF2_OP3_43_52 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
type II secretion system [rpteom
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_5
R_WOR_2_45_21, WOR-2, Bacteria

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2624..4339
DNA (1716bp) protein (572aa)
type iv-a pilus assembly atpase pilb; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Type IV-A pilus assembly ATPase PilB id=4305186 bin=GWC2_OP3_44_8 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
type IV-a pilus assembly atpase pilb
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_6
R_WOR_2_45_21, WOR-2, Bacteria

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4336..5025
DNA (690bp) protein (230aa)
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Type II secretion system protein id=4012572 bin=GWF2_OP3_43_52 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
general secretion pathway protein F
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_7
R_WOR_2_45_21, WOR-2, Bacteria

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5066..5503
DNA (438bp) protein (146aa)
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Type II secretion system protein id=4012572 bin=GWF2_OP3_43_52 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
type II secretion system F domain-containing protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_8
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

5592..5999
DNA (408bp) protein (136aa)
pilA; pilin polypeptide Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
PilE-like protein id=4305242 bin=GWC2_OP3_44_8 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
pilA; pilin polypeptide
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_9
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

6155..6346
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TNZ2_METAC
hypothetical protein; K07339 hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_10
R_WOR_2_45_21, WOR-2, Bacteria

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6348..6557
DNA (210bp) protein (70aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Putative uncharacterized protein id=4044260 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_11
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

6615..7055
DNA (441bp) protein (147aa)
PilE-like protein; K02655 type IV pilus assembly protein PilE Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
PilE-like protein id=4483308 bin=GWA2_Elusi-like_A8_64_40 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusi-like_A8_64_40 organism_group=Elusimicrobia
PilE-like protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_12
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

7099..7524
DNA (426bp) protein (142aa)
pilA; pilin polypeptide Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
General secretion pathway protein id=4305248 bin=GWC2_OP3_44_8 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_13
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

7575..8039
DNA (465bp) protein (155aa)
id=4012576 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
id=4012576 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_14
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

8047..8628
DNA (582bp) protein (194aa)
id=4012577 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
id=4012577 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_trna_1
unknown

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8760..8832
DNA (73bp)
transferRNA
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_15
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

8775..10352
DNA (1578bp) protein (526aa)
AMMECR1 domain-containing protein; K06990 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
AMMECR1 domain protein id=4236868 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
AMMECR1 domain-containing protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_16
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

10370..11110
DNA (741bp) protein (247aa)
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Ribosomal RNA small subunit methyltransferase E id=4735704 bin=GWC2_OP3_44_8 species=Dorea longicatena genus=Dorea taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_17
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

11117..12508
DNA (1392bp) protein (464aa)
MiaB family RNA modification protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
RNA modification enzyme, MiaB family id=4236874 bin=GWF2_OP3_43_52 species=Caldicellulosiruptor saccharolyticus genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
MiaB family RNA modification protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_18
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

12774..13337
DNA (564bp) protein (188aa)
putative membrane protein, required for colicin V production
Putative uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Putative uncharacterized protein id=2079763 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_19
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

13337..14284
DNA (948bp) protein (316aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Putative uncharacterized protein id=2079767 bin=GWB2_CP_45_9 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_20
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

14360..16132
DNA (1773bp) protein (591aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
DNA primase id=4236882 bin=GWF2_OP3_43_52 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
DNA primase
RIFCSPHIGHO2_02_FULL_CPR_45_21_rifcsphigho2_02_scaffold_13640_21
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

16191..17720
DNA (1530bp) protein (510aa)
RpoD family RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
RNA polymerase sigma factor id=4236884 bin=GWF2_OP3_43_52 species=Parachlamydia acanthamoebae genus=Parachlamydia taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RpoD family RNA polymerase sigma-70 subunit
Displaying 22 items

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