ggKbase home page

cg1_0.2_scaffold_1594_c

Search features with annotation key words

Displaying items 1-30 of 38 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg1_0.2_scaffold_1594_c_1
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(3..632)
DNA (630bp) protein (210aa)
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=CG_Omnitr_03
Isoleucine--tRNA ligase id=5028987 bin=GWA2_OP3_53_43 species=Fervidobacterium nodosum genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
isoleucyl-tRNA synthetase
cg1_0.2_scaffold_1594_c_2
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(632..1486)
DNA (855bp) protein (285aa)
mtaP; methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=CG_Omnitr_03
Purine nucleoside phosphorylase id=4113417 bin=GWF2_OP3_43_52 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
mtaP; methylthioadenosine phosphorylase
cg1_0.2_scaffold_1594_c_3
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(1562..1861)
DNA (300bp) protein (100aa)
putative integral membrane protein Tax=CG_Omnitr_03
Putative uncharacterized protein id=3087971 bin=GWA2_OP3_53_43 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
putative integral membrane protein
cg1_0.2_scaffold_1594_c_4
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(1849..2646)
DNA (798bp) protein (266aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2] Tax=CG_Omnitr_03
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Thermincola potens (strain JR) RepID=D5X963_THEPJ
cg1_0.2_scaffold_1594_c_5
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(2643..3326)
DNA (684bp) protein (228aa)
pyridoxal phosphate enzyme, YggS family; K06997 Tax=CG_Omnitr_03
alanine racemase; K06997 id=7200398 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
pyridoxal phosphate enzyme, YggS family
cg1_0.2_scaffold_1594_c_6
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(3361..4917)
DNA (1557bp) protein (519aa)
hypothetical protein Tax=CG_Omnitr_03
Putative glycosyl hydrolase, BNR repeat id=2284916 bin=GWB2_CP_45_9 species=unknown genus=Lacinutrix taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein
cg1_0.2_scaffold_1594_c_7
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(4924..6162)
DNA (1239bp) protein (413aa)
Cell division protein ftsA n=1 Tax=Geobacter sp. (strain M18) RepID=E8WRT9_GEOS8
cell division protein FtsA; K03590 cell division protein FtsA Tax=CG_Omnitr_03
cell division protein FtsA
cg1_0.2_scaffold_1594_c_8
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(6198..6980)
DNA (783bp) protein (261aa)
Tax=CG_Omnitr_03
cg1_0.2_scaffold_1594_c_9
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(6958..7893)
DNA (936bp) protein (312aa)
D-alanine--D-alanine ligase Tax=CG_Omnitr_03
D-alanine--D-alanine ligase id=1995399 bin=GWB2_CP_45_9 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
D-alanine--D-alanine ligase
cg1_0.2_scaffold_1594_c_10
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(7898..8776)
DNA (879bp) protein (293aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=CG_Omnitr_03
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase id=1995401 bin=GWB2_CP_45_9 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
cg1_0.2_scaffold_1594_c_11
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(8773..10146)
DNA (1374bp) protein (458aa)
UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=CG_Omnitr_03
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU50_9FIRM
cg1_0.2_scaffold_1594_c_12
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(10143..11243)
DNA (1101bp) protein (367aa)
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L5Q1_9BACT
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undeca
cg1_0.2_scaffold_1594_c_13
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(11230..12327)
DNA (1098bp) protein (366aa)
cell cycle protein; K03588 cell division protein FtsW Tax=CG_Omnitr_03
Stage V sporulation protein E id=4394284 bin=GWF2_OP3_43_52 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
ftsW; cell division protein FtsW
cg1_0.2_scaffold_1594_c_14
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(12331..13617)
DNA (1287bp) protein (429aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=CG_Omnitr_03
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase id=1995411 bin=GWB2_CP_45_9 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
cg1_0.2_scaffold_1594_c_15
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(13620..14711)
DNA (1092bp) protein (364aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] Tax=CG_Omnitr_03
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase id=4113433 bin=GWF2_OP3_43_52 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
cg1_0.2_scaffold_1594_c_16
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(14684..16072)
DNA (1389bp) protein (463aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=CG_Omnitr_03
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TR15_THETC
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase
cg1_0.2_scaffold_1594_c_17
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(16077..17564)
DNA (1488bp) protein (496aa)
UDP-N-acetylmuramyl tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=CG_Omnitr_03
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI00037F5C7C
UDP-N-acetylmuramyl tripeptide synthetase
cg1_0.2_scaffold_1594_c_18
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(17564..19276)
DNA (1713bp) protein (571aa)
ftsI; bifunctional peptidoglycan transglycosylase/transpeptidase FtsI; K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=CG_Omnitr_03
Peptidoglycan glycosyltransferase id=2241251 bin=GWB2_CP_45_9 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
ftsI; bifunctional peptidoglycan transglycosylase/transpeptidase FtsI
cg1_0.2_scaffold_1594_c_19
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(19285..19659)
DNA (375bp) protein (125aa)
Tax=CG_Omnitr_03
cg1_0.2_scaffold_1594_c_20
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(19656..20552)
DNA (897bp) protein (299aa)
S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=CG_Omnitr_03
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Thermincola potens (strain JR) RepID=D5X9A9_THEPJ
S-adenosyl-methyltransferase MraW
cg1_0.2_scaffold_1594_c_21
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(20549..20716)
DNA (168bp) protein (56aa)
Tax=CG_Omnitr_03
cg1_0.2_scaffold_1594_c_22
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(20744..21184)
DNA (441bp) protein (147aa)
cell division protein MraZ n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B55CF3
hypothetical protein; K03925 MraZ protein Tax=CG_Omnitr_03
cell division protein MraZ
cg1_0.2_scaffold_1594_c_23
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(21925..22392)
DNA (468bp) protein (156aa)
Ribonuclease H n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2S1_THEOJ
ribonuclease H Tax=CG_Omnitr_03
ribonuclease H
cg1_0.2_scaffold_1594_c_24
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(22376..23107)
DNA (732bp) protein (244aa)
zinc ribbon domain family; K07164 Tax=CG_Omnitr_03
Putative uncharacterized protein id=4705375 bin=GWC2_OP3_44_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
zinc ribbon domain family
cg1_0.2_scaffold_1594_c_trna_2
unknown

Not on your lists

comp(23244..23317)
DNA (74bp)
transferRNA
cg1_0.2_scaffold_1594_c_trna_1
unknown

Not on your lists

comp(23520..23592)
DNA (73bp)
transferRNA
cg1_0.2_scaffold_1594_c_25
unknown

Not on your lists

comp(23865..24134)
DNA (270bp) protein (90aa)

This feature has no annotations

cg1_0.2_scaffold_1594_c_26
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(24208..24831)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GRK8_SPHAL
hypothetical protein Tax=CG_Omnitr_03
hypothetical protein
cg1_0.2_scaffold_1594_c_27
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(25204..27048)
DNA (1845bp) protein (615aa)
typA; GTP-binding protein TypA; K06207 GTP-binding protein Tax=CG_Omnitr_03
GTP-binding protein TypA id=4908221 bin=GWA2_OP3_52_12 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
typA; translation-regulating membrane GTPase TypA
cg1_0.2_scaffold_1594_c_28
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(27085..28779)
DNA (1695bp) protein (565aa)
RNA polymerase sigma factor RpoD-like; K03086 RNA polymerase primary sigma factor Tax=CG_Omnitr_03
RNA polymerase sigma factor id=2079776 bin=GWB2_CP_45_9 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
rpoD; RNA polymerase sigma-70 factor RpoD
Displaying items 1-30 of 38 in total

View Taxonomy