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cg1_0.2_scaffold_1459_c

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Displaying items 1-30 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg1_0.2_scaffold_1459_c_1
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(3..401)
DNA (399bp) protein (133aa)
type II secretion system protein E Tax=CG_Omnitr_03
Type IV-A pilus assembly ATPase PilB id=2254247 bin=GWB2_CP_45_9 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
type II secretion system protein E
cg1_0.2_scaffold_1459_c_2
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(391..1596)
DNA (1206bp) protein (402aa)
hypothetical protein Tax=CG_Omnitr_03
RNA modification enzyme, MiaB family id=4735705 bin=GWC2_OP3_44_8 species=Caldicellulosiruptor saccharolyticus genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
cg1_0.2_scaffold_1459_c_3
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(1601..2317)
DNA (717bp) protein (239aa)
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=CG_Omnitr_03
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridium sp. CAG:122 RepID=R5S431_9CLOT
hypothetical protein
cg1_0.2_scaffold_1459_c_trna_1
unknown

Not on your lists

comp(2451..2521)
DNA (71bp)
transferRNA
cg1_0.2_scaffold_1459_c_4
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(2598..3659)
DNA (1062bp) protein (354aa)
type IV pilus retraction protein PilT; K02669 twitching motility protein PilT Tax=CG_Omnitr_03
Twitching motility protein id=4939665 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
type IV pilus retraction protein PilT
cg1_0.2_scaffold_1459_c_5
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(3765..4640)
DNA (876bp) protein (292aa)
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Tax=CG_Omnitr_03
Type II secretion system protein E id=1982816 bin=GWE2_RBX1_39_32 species=Caldicellulosiruptor owensensis genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
cg1_0.2_scaffold_1459_c_6
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(4637..4999)
DNA (363bp) protein (121aa)
pilA; fimbrial protein pilA Tax=CG_Omnitr_03
Type IV pilin PilA id=4219538 bin=GWC2_Proteo_65_14_Ab886 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
pilA; fimbrial protein pilA
cg1_0.2_scaffold_1459_c_7
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(5064..6287)
DNA (1224bp) protein (408aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=CG_Omnitr_03
Type II secretion system protein id=4305238 bin=GWC2_OP3_44_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
pilC; type 4 fimbrial assembly protein pilC
cg1_0.2_scaffold_1459_c_8
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(6290..7993)
DNA (1704bp) protein (568aa)
type II secretion system protein E (GspE); K02652 type IV pilus assembly protein PilB Tax=CG_Omnitr_03
Type IV-A pilus assembly ATPase PilB id=4012487 bin=GWF2_OP3_43_52 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
type II secretion system protein E (GspE)
cg1_0.2_scaffold_1459_c_9
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(7990..9531)
DNA (1542bp) protein (514aa)
type II and III secretion system secretin; K02453 general secretion pathway protein D Tax=CG_Omnitr_03
Putatively involved in type II secretion system id=4208772 bin=GWA2_OP3_53_43 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
type II and III secretion system secretin
cg1_0.2_scaffold_1459_c_10
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(9605..10081)
DNA (477bp) protein (159aa)
Tax=CG_Omnitr_03
cg1_0.2_scaffold_1459_c_11
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(10096..10596)
DNA (501bp) protein (167aa)
Tax=CG_Omnitr_03
cg1_0.2_scaffold_1459_c_12
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(10599..12167)
DNA (1569bp) protein (523aa)
Marine sediment metagenome DNA, contig: S03H2_S21899 Tax=CG_Omnitr_03
cg1_0.2_scaffold_1459_c_13
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(12164..12352)
DNA (189bp) protein (63aa)
id=3340679 Tax=CG_Omnitr_03
id=3340679 bin=GWC2_Planctomycete_KSU_39_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
cg1_0.2_scaffold_1459_c_14
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(12449..13303)
DNA (855bp) protein (285aa)
peptidase M48 Ste24p Tax=CG_Omnitr_03
Peptidase M48, Ste24p id=3574453 bin=GWA2_OP3_53_43 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
peptidase M48 Ste24p
cg1_0.2_scaffold_1459_c_15
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(13279..13596)
DNA (318bp) protein (106aa)
CutA1 divalent ion tolerance protein Tax=CG_Omnitr_03
Uncharacterized protein id=4903944 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
CutA1 divalent ion tolerance protein
cg1_0.2_scaffold_1459_c_16
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(13620..13886)
DNA (267bp) protein (89aa)
Tax=CG_Omnitr_03
cg1_0.2_scaffold_1459_c_17
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(13909..14115)
DNA (207bp) protein (69aa)
Putative uncharacterized protein Tax=CG_Omnitr_03
Putative uncharacterized protein id=4012480 bin=GWF2_OP3_43_52 species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
cg1_0.2_scaffold_1459_c_18
CG_Omnitr_07, Omnitrophica, Bacteria

Not on your lists

comp(14112..14345)
DNA (234bp) protein (78aa)
Tax=CG_Omnitr_07
cg1_0.2_scaffold_1459_c_19
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(14332..15006)
DNA (675bp) protein (225aa)
Tax=CG_Omnitr_03
cg1_0.2_scaffold_1459_c_20
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(15017..15433)
DNA (417bp) protein (139aa)
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD Tax=CG_Omnitr_03
Biopolymer transport protein ExbD/TolR id=3003428 bin=GWF2_OP3_38_59 species=uncultured microorganism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
biopolymer transport protein ExbD/TolR
cg1_0.2_scaffold_1459_c_21
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(15465..16082)
DNA (618bp) protein (206aa)
MotA/TolQ/ExbB proton channel family domain protein (Fragment) n=1 Tax=uncultured microorganism RepID=F8UHI0_9ZZZZ
MotA/TolQ/ExbB proton channel Tax=CG_Omnitr_03
MotA/TolQ/ExbB proton channel
cg1_0.2_scaffold_1459_c_22
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(16079..18592)
DNA (2514bp) protein (838aa)
hypothetical protein Tax=CG_Omnitr_03
TPR repeat-containing protein (Fragment) id=4208807 bin=GWA2_OP3_53_43 species=uncultured microorganism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
cg1_0.2_scaffold_1459_c_23
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(18653..21430)
DNA (2778bp) protein (926aa)
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=CG_Omnitr_03
UvrABC system protein A id=4208808 bin=GWA2_OP3_53_43 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
excinuclease ABC subunit A
cg1_0.2_scaffold_1459_c_24
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(21488..21733)
DNA (246bp) protein (82aa)
hypothetical protein Tax=CG_Omnitr_03
Putative uncharacterized protein id=4208809 bin=GWA2_OP3_53_43 species=uncultured microorganism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
cg1_0.2_scaffold_1459_c_25
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(21776..22579)
DNA (804bp) protein (268aa)
aspartate dehydrogenase Tax=CG_Omnitr_03
Probable L-aspartate dehydrogenase id=2040249 bin=GWB2_CP_45_9 species=Methanosalsum zhilinae genus=Methanosalsum taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
aspartate dehydrogenase
cg1_0.2_scaffold_1459_c_26
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(22579..23547)
DNA (969bp) protein (323aa)
quinolinate synthetase complex subunit A; K03517 quinolinate synthase [EC:2.5.1.72] Tax=CG_Omnitr_03
Quinolinate synthase A n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E7F9_METEZ rbh
quinolinate synthetase complex subunit A
cg1_0.2_scaffold_1459_c_27
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(23544..23900)
DNA (357bp) protein (119aa)
L-aspartate-alpha-decarboxylase Tax=CG_Omnitr_03
L-aspartate-alpha-decarboxylase
Aspartate 1-decarboxylase id=2850940 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
cg1_0.2_scaffold_1459_c_28
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(23881..24699)
DNA (819bp) protein (273aa)
pantoate/beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] Tax=CG_Omnitr_03
Pantothenate synthetase id=4305168 bin=GWC2_OP3_44_8 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
pantoate--beta-alanine ligase
cg1_0.2_scaffold_1459_c_29
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(24717..25118)
DNA (402bp) protein (134aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=CG_Omnitr_03
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase id=4208812 bin=GWA2_OP3_53_43 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
Displaying items 1-30 of 51 in total

View Taxonomy