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cg1_0.2_scaffold_5043_c

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg1_0.2_scaffold_5043_c_trna_2
unknown

Not on your lists

comp(1..80)
DNA (80bp)
transferRNA
cg1_0.2_scaffold_5043_c_1
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(656..1318)
DNA (663bp) protein (221aa)
hypothetical protein Tax=CG_Omnitr_03
Putative uncharacterized protein id=4894946 bin=GWC2_Nitrospirae-rel_56_14 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
cg1_0.2_scaffold_5043_c_2
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(1323..2588)
DNA (1266bp) protein (422aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=CG_Omnitr_03
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase id=4123798 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
cg1_0.2_scaffold_5043_c_3
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(2593..5598)
DNA (3006bp) protein (1002aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] Tax=CG_Omnitr_03
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] id=5241347 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein
cg1_0.2_scaffold_5043_c_trna_1
unknown

Not on your lists

comp(5801..5872)
DNA (72bp)
transferRNA
cg1_0.2_scaffold_5043_c_4
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(6140..6703)
DNA (564bp) protein (188aa)
ribosome recycling factor Tax=CG_Omnitr_03
Ribosome-recycling factor id=1791204 bin=GWB2_CP_45_9 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
ribosome recycling factor
cg1_0.2_scaffold_5043_c_5
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(6721..7458)
DNA (738bp) protein (246aa)
pyrH; uridylate kinase (EC:2.7.4.-); K09903 uridylate kinase [EC:2.7.4.22] Tax=CG_Omnitr_03
pyrH; uridylate kinase (EC:2.7.4.-)
Uridylate kinase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YGE1_THEYD
cg1_0.2_scaffold_5043_c_6
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(7451..8047)
DNA (597bp) protein (199aa)
Elongation factor Ts n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TFE1_CALOO
translation elongation factor Ts; K02357 elongation factor Ts Tax=CG_Omnitr_03
translation elongation factor Ts
cg1_0.2_scaffold_5043_c_7
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists


comp(8044..8928)
DNA (885bp) protein (295aa)
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=CG_Omnitr_03
30S ribosomal protein S2 id=4123596 bin=GWF2_OP3_43_52 species=Dialister succinatiphilus genus=Dialister taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
30S ribosomal protein S2
cg1_0.2_scaffold_5043_c_8
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

9013..9951
DNA (939bp) protein (313aa)
mviM; dehydrogenase Tax=CG_Omnitr_03
Predicted dehydrogenase id=2232231 bin=GWA2_OP3_53_43 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
mviM; dehydrogenase
cg1_0.2_scaffold_5043_c_9
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

9930..11063
DNA (1134bp) protein (378aa)
lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=CG_Omnitr_03
lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase id=4188561 bin=GWF2_OP3_38_59 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
cg1_0.2_scaffold_5043_c_10
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(11060..11863)
DNA (804bp) protein (268aa)
hypothetical protein; K09949 hypothetical protein Tax=CG_Omnitr_03
Putative uncharacterized protein id=4128226 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
cg1_0.2_scaffold_5043_c_11
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(12082..12864)
DNA (783bp) protein (261aa)
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=CG_Omnitr_03
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JQG8_9FIRM
cg1_0.2_scaffold_5043_c_12
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(12874..14193)
DNA (1320bp) protein (440aa)
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]; K02535 UDP-3-O-[3-hydroxymyristo
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=4123773 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase
cg1_0.2_scaffold_5043_c_13
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

comp(14171..15235)
DNA (1065bp) protein (355aa)
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-); K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] Tax=CG_Omnitr_03
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-acylglucosamine N-acyltransferase id=4123771 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
cg1_0.2_scaffold_5043_c_14
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(15270..15770)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B75C82
OmpH-like outer membrane protein; K06142 outer membrane protein Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
OmpH-like outer membrane protein
Displaying 16 items

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