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bjp_ig3402_scaffold_619

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_619_1
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

comp(3..206)
DNA (204bp) protein (68aa)
tRNA (Guanine37-N1)-methyltransferase (EC:2.1.1.-)
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI000378ADB1
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
bjp_ig3402_scaffold_619_2
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

comp(207..1337)
DNA (1131bp) protein (377aa)
queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RBG_13_WOR-2_44_8b_curated
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase id=3681853 bin=GWF2_OP3_43_52 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bjp_ig3402_scaffold_619_3
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(1338..3881)
DNA (2544bp) protein (848aa)
oligosaccharyl transferase STT3 subunit; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] Tax=CG_Omnitr_01
oligosaccharyl transferase, STT3 subunit (EC:2.-.-.-)
Oligosaccharyl transferase STT3 subunit id=4202901 bin=GWF2_OP3_43_52 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bjp_ig3402_scaffold_619_4
Sulfurihydrogenibium sp. YO3AOP1, Sulfurihydrogenibium, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(3912..4943)
DNA (1032bp) protein (344aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000255|HAMAP-Rule:MF_00113}; EC=2.4.99.17 {ECO:0000255|HAMAP-Rule:MF_00113};; Queuosine biosynthesis protein QueA {ECO:0000255|HAMAP-Rule:M
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=QUEA_SULSY
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
bjp_ig3402_scaffold_619_5
RIFOXYC2_FULL_WOR_2_45_15_curated, WOR-2, Bacteria

Not on your lists

comp(5168..5713)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FI22_9CLOT
hypothetical protein; K09765 hypothetical protein Tax=RIFOXYC2_FULL_WOR_2_45_15_curated
hypothetical protein
bjp_ig3402_scaffold_619_6
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(5725..6750)
DNA (1026bp) protein (342aa)
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=CG_Omnitr_01
RuvB: holliday junction ATP-dependent DNA helicase, subunit B id=4188366 bin=GWF2_OP3_38_59 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159 rbh
ruvB; Holliday junction DNA helicase RuvB
bjp_ig3402_scaffold_619_7
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(6787..7542)
DNA (756bp) protein (252aa)
scpA; segregation and condensation protein A; K05896 segregation and condensation protein A Tax=CG_Omnitr_01
Segregation and condensation protein A id=2651444 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
scpA; chromosome segregation and condensation protein ScpA
bjp_ig3402_scaffold_619_8
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

comp(7529..8518)
DNA (990bp) protein (330aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RBG_13_WOR_2_41_10_curated
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase id=4211586 bin=GWC2_OP3-like_45_7 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
bjp_ig3402_scaffold_619_9
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(8554..10764)
DNA (2211bp) protein (737aa)
translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Translation initiation factor IF-2 id=3681834 bin=GWF2_OP3_43_52 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
infB; translation initiation factor IF-2
bjp_ig3402_scaffold_619_10
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(10767..11915)
DNA (1149bp) protein (383aa)
nusA; transcription elongation protein nusA (N utilization substance protein A) (L factor) Tax=CG_Omnitr_01
Transcription termination factor NusA id=3681832 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
NusA antitermination factor
bjp_ig3402_scaffold_619_11
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

comp(11912..12376)
DNA (465bp) protein (155aa)
YlxS; K09748 ribosome maturation factor RimP Tax=RBG_13_WOR_2_41_10_curated
Ribosome maturation factor RimP id=3681830 bin=GWF2_OP3_43_52 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rimP; ribosome maturation factor RimP
bjp_ig3402_scaffold_619_12
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


comp(12380..13627)
DNA (1248bp) protein (416aa)
proS; Proline--tRNA ligase (EC:6.1.1.15)
proS; prolyl-tRNA synthetase Tax=CG_Omnitr_01
Putative prolyl-tRNA synthetase id=4211580 bin=GWC2_OP3-like_45_7 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
bjp_ig3402_scaffold_619_13
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(13636..14889)
DNA (1254bp) protein (418aa)
type II secretion system protein E; K02283 pilus assembly protein CpaF Tax=CG_Omnitr_01
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily id=1937651 bin=GWB2_CP_45_9 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
type II secretion system protein E
bjp_ig3402_scaffold_619_14
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(14889..15962)
DNA (1074bp) protein (358aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=CG_Omnitr_01
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS28_CLOSA
bjp_ig3402_scaffold_619_15
GWB2_WOR_2_45_9_curated, WOR-2, Bacteria

Not on your lists

comp(15947..17041)
DNA (1095bp) protein (365aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=GWB2_WOR_2_45_9_curated
Membrane-associated zinc metalloprotease id=1937655 bin=GWB2_CP_45_9 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3 rbh
hypothetical protein
bjp_ig3402_scaffold_619_16
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(17042..18217)
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase id=1937657 bin=GWB2_CP_45_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
bjp_ig3402_scaffold_619_17
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(18235..19017)
DNA (783bp) protein (261aa)
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=CG_Omnitr_01
Phosphatidate cytidylyltransferase id=1937660 bin=GWB2_CP_45_9 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
cdsA; phosphatidate cytidylyltransferase
bjp_ig3402_scaffold_619_18
CG_Maritim_01, Maritimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19022..19753)
DNA (732bp) protein (244aa)
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=CG_Maritim_01
uppS2; isoprenyl transferase (EC:2.5.1.-)
Isoprenyl transferase id=2665227 bin=GWA2_OP3_53_43 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
bjp_ig3402_scaffold_619_19
RIFOXYC2_FULL_WOR_2_45_15_curated, WOR-2, Bacteria

Not on your lists

comp(19781..21394)
DNA (1614bp) protein (538aa)
Putative uncharacterized protein id=1937664 bin=GWB2_CP_45_9 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein Tax=RIFOXYC2_FULL_WOR_2_45_15_curated
hypothetical protein
bjp_ig3402_scaffold_619_20
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(21419..22435)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein id=3681817 bin=GWF2_OP3_43_52 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein Tax=GWF2_WOR_2_43_52_curated
hypothetical protein
bjp_ig3402_scaffold_619_21
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

comp(22518..22901)
DNA (384bp) protein (128aa)
hypothetical protein Tax=RBG_13_WOR_2_41_10_curated
bjp_ig3402_scaffold_619_22
R_WOR_2_50_17, WOR-2, Bacteria

Not on your lists

comp(22928..23575)
DNA (648bp) protein (216aa)
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB Tax=RIFCSPHIGHO2_02_FULL_WOR_2_50_17_curated
OmpA/MotB domain protein id=4188433 bin=GWF2_OP3_38_59 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
hypothetical protein
bjp_ig3402_scaffold_619_23
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

comp(23729..25000)
DNA (1272bp) protein (424aa)
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4] Tax=RBG_13_WOR_2_41_10_curated
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase id=1857550 bin=GWB2_CP_45_9 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
bjp_ig3402_scaffold_619_24
R_WOR_2_46_37, WOR-2, Bacteria

Not on your lists

comp(25049..26290)
DNA (1242bp) protein (414aa)
2-isopropylmalate synthase 2 (EC:2.3.3.13); K02594 homocitrate synthase NifV [EC:2.3.3.14] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_46_37_curated
2-isopropylmalate synthase 2 (EC:2.3.3.13)
2-isopropylmalate synthase 2 id=1857551 bin=GWB2_CP_45_9 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
bjp_ig3402_scaffold_619_25
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(26430..28259)
DNA (1830bp) protein (610aa)
5'-nucleotidase (EC:3.1.3.5); K01081 5'-nucleotidase [EC:3.1.3.5] Tax=GWF2_WOR_2_43_52_curated
UPI000297167D related cluster id=3681785 bin=GWF2_OP3_43_52 species=uncultured Flavobacteriia bacterium genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
bjp_ig3402_scaffold_619_26
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

comp(28256..29836)
DNA (1581bp) protein (527aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RBG_13_WOR_2_41_10_curated
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase id=3681783 bin=GWF2_OP3_43_52 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bjp_ig3402_scaffold_619_27
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

comp(29854..30807)
DNA (954bp) protein (318aa)
class V aminotransferase Tax=RBG_13_WOR-2_44_8b_curated
Strongly similar to aspartate transaminase [Methanobacterium thermoformicicum] id=2665518 bin=GWA2_OP3_53_43 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
aminotransferase class V
Displaying 27 items

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