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bjp_ig3402_scaffold_707

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_707_1

Not on your lists

2..700
DNA (699bp) protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS89908.1}; TaxID=1618967 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_43_11.;"
id=2966244 bin=GWA1_ZB2_49_26 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
bjp_ig3402_scaffold_707_2
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

660..1199
DNA (540bp) protein (180aa)
Radical SAM n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWM2_DESAC
radical SAM domain-containing protein Tax=CG_Omnitr_01
radical SAM protein
bjp_ig3402_scaffold_707_3
R_WOR_2_48_11, WOR-2, Bacteria

Not on your lists

1252..1914
DNA (663bp) protein (221aa)
hypothetical protein
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
Putative uncharacterized protein id=3623450 bin=GWF2_OP3_38_59 species=uncultured archaeon GZfos34H9 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
bjp_ig3402_scaffold_707_4
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

1977..2279
DNA (303bp) protein (101aa)
YGGT family protein id=3889809 bin=GWF2_OP3_43_52 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein; K02221 YggT family protein Tax=GWF2_WOR_2_43_52_curated
hypothetical protein
bjp_ig3402_scaffold_707_5
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

2312..2938
DNA (627bp) protein (209aa)
Glycosyl hydrolase (Fragment) id=4202406 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
glycosyl hydrolase Tax=GWF2_WOR_2_43_52_curated
bjp_ig3402_scaffold_707_6
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

2977..5967
DNA (2991bp) protein (997aa)
diguanylate cyclase (GGDEF) domain-containing protein Tax=CG_Omnitr_01
Diguanylate cyclase and metal dependent phosphohydrolase id=4113421 bin=GWF2_OP3_43_52 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
diguanylate cyclase and metal dependent phosphohydrolase
bjp_ig3402_scaffold_707_7
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

5986..6816
DNA (831bp) protein (277aa)
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Tax=RBG_16_NC10_65_8_curated
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3E602
bjp_ig3402_scaffold_707_8
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

6883..8442
DNA (1560bp) protein (520aa)
Sodium:neurotransmitter symporter family protein n=1 Tax=uncultured microorganism RepID=F8UHM0_9ZZZZ
SNF family Na+-dependent transporter Tax=RBG_13_WOR_2_41_10_curated
SNF family Na+-dependent transporter
bjp_ig3402_scaffold_707_9
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

8540..8920
DNA (381bp) protein (127aa)
id=4609146 Tax=CG_Omnitr_01
id=4609146 bin=GWF2_OP3_38_59 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
bjp_ig3402_scaffold_707_trna_1
unknown

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9023..9095
DNA (73bp)
transferRNA
bjp_ig3402_scaffold_707_10
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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9200..10381
DNA (1182bp) protein (394aa)
tryptophan synthase subunit beta (EC:4.2.1.20); K01696 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RBG_13_WOR_2_41_10_curated
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain id=4011976 bin=GWF2_OP3_43_52 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bjp_ig3402_scaffold_707_11
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

10378..11166
DNA (789bp) protein (263aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=GWF2_WOR_2_43_52_curated
Tryptophan synthase alpha chain id=4192614 bin=GWC2_OP3_44_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
trpA; tryptophan synthase subunit alpha
bjp_ig3402_scaffold_707_12
R_WOR_2_52_10, WOR-2, Bacteria

Not on your lists

11166..12449
DNA (1284bp) protein (428aa)
processing peptidase (EC:3.4.24.64)
peptidase M16 domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_52_10_curated
Peptidase M16 domain protein id=4192613 bin=GWC2_OP3_44_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
bjp_ig3402_scaffold_707_13
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12782..12928
DNA (147bp) protein (49aa)
Uncharacterized protein id=5800244 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein Tax=GWF2_Verrucomicrobia_62_7_curated
hypothetical protein
bjp_ig3402_scaffold_707_14
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

13111..13374
DNA (264bp) protein (88aa)
Ribosomal silencing factor RsfS n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CM72_9CLOT
hypothetical protein; K09710 ribosome-associated protein Tax=CG_Omnitr_01
iojap family protein
bjp_ig3402_scaffold_707_15
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists


13349..15010
DNA (1662bp) protein (554aa)
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RBG_13_WOR-2_44_8b_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase id=2740037 bin=GWF2_OP3_38_59 species=Halobacillus halophilus genus=Halobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159 rbh
bjp_ig3402_scaffold_707_16
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

15036..16721
DNA (1686bp) protein (562aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=CG_Omnitr_01
Exonuclease RecJ id=2740035 bin=GWF2_OP3_38_59 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159 rbh
single-stranded-DNA-specific exonuclease RecJ
bjp_ig3402_scaffold_707_17
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists


comp(16743..16973)
DNA (231bp) protein (77aa)
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=CG_Omnitr_03
50S ribosomal protein L28 id=3333210 bin=GWA2_OP3_52_12 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
50S ribosomal protein L28
bjp_ig3402_scaffold_707_18
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

17185..20109
DNA (2925bp) protein (975aa)
hypothetical protein Tax=RBG_13_WOR_2_41_10_curated
hypothetical protein id=14430231 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
bjp_ig3402_scaffold_707_19
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

20157..20522
DNA (366bp) protein (122aa)
Response regulator receiver protein n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QFY3_DESB2
atoC; sigma-54 dependent response regulator atoC; K07714 two-component system, NtrC family, response regulator AtoC Tax=RBG_13_WOR_2_41_10_curated
response regulator receiver protein
bjp_ig3402_scaffold_707_20
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

20519..20899
DNA (381bp) protein (127aa)
Tax=CG_Omnitr_01
bjp_ig3402_scaffold_707_21
R_OP3X_51_18, OP3X, Bacteria

Not on your lists

comp(20896..23592)
DNA (2697bp) protein (899aa)
Cellobiose phosphorylase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D1U8_HALOH
Cellobiose phosphorylase
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated
bjp_ig3402_scaffold_707_22
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

23757..25157
DNA (1401bp) protein (467aa)
Putative RNA-processing exonuclease; K07576 metallo-beta-lactamase family protein Tax=RBG_13_WOR-2_44_8b_curated
Putative RNA-processing exonuclease id=4011968 bin=GWF2_OP3_43_52 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8 rbh
RNA-processing exonuclease
bjp_ig3402_scaffold_707_23
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

25215..25769
DNA (555bp) protein (185aa)
hypothetical protein Tax=CG_Omnitr_01
id=4372991 bin=GWF2_OP3_38_59 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
bjp_ig3402_scaffold_707_24
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

25753..27789
DNA (2037bp) protein (679aa)
id=4372992 Tax=CG_Omnitr_01
Displaying 25 items

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