ggKbase home page

bjp_ig3402_scaffold_1231

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_1231_1
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

1..234
DNA (234bp) protein (78aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) Tax=RBG_13_WOR_2_41_10_curated
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=3 Tax=root RepID=R7DB33_9FIRM
bjp_ig3402_scaffold_1231_2
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists


203..577
DNA (375bp) protein (125aa)
30S ribosomal protein S12 id=4218951 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=GWF2_WOR_2_43_52_curated
30S ribosomal protein S12
bjp_ig3402_scaffold_1231_3
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists


581..1051
DNA (471bp) protein (157aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RBG_13_WOR-2_44_8b_curated
30S ribosomal protein S7 id=4218952 bin=GWF2_OP3_43_52 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
30S ribosomal protein S7
bjp_ig3402_scaffold_1231_4
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

1045..3132
DNA (2088bp) protein (696aa)
translation elongation factor 2 (EF-2/EF-G); K02355 elongation factor G Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
Elongation factor G id=3619759 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
translation elongation factor G
bjp_ig3402_scaffold_1231_5
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

3144..4337
DNA (1194bp) protein (398aa)
TufB2; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Elongation factor Tu id=2173690 bin=GWB2_CP_45_9 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3 rbh
Elongation factor EF-Tu
bjp_ig3402_scaffold_1231_6
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


4412..4720
DNA (309bp) protein (103aa)
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=CG_Omnitr_01
30S ribosomal protein S10 id=5029033 bin=GWA2_OP3_53_43 species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
30S ribosomal protein S10
bjp_ig3402_scaffold_1231_7
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists


4823..5449
DNA (627bp) protein (209aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RBG_13_WOR-2_44_8b_curated
50S ribosomal protein L3 id=4218983 bin=GWF2_OP3_43_52 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
50S ribosomal protein L3P
bjp_ig3402_scaffold_1231_8
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


5449..6123
DNA (675bp) protein (225aa)
50S ribosomal protein L4 n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N7J8_9FIRM
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=CG_Omnitr_01
rplD; 50S ribosomal protein L4
bjp_ig3402_scaffold_1231_9
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists


6123..6395
DNA (273bp) protein (91aa)
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23 Tax=RBG_13_WOR-2_44_8b_curated
50S ribosomal protein L23 id=3686033 bin=GWF2_OP3_38_59 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
rplW; 50S ribosomal protein L23
bjp_ig3402_scaffold_1231_10
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists


6405..7238
DNA (834bp) protein (278aa)
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
50S ribosomal protein L2 id=3868570 bin=GWC2_OP3_44_8 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
rplB; 50S ribosomal protein L2
bjp_ig3402_scaffold_1231_11
R_WOR_2_46_37, WOR-2, Bacteria

Not on your lists


7251..7538
DNA (288bp) protein (96aa)
rpsS; ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_46_37_curated
30S ribosomal protein S19 id=2173680 bin=GWB2_CP_45_9 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
30S ribosomal protein S19
bjp_ig3402_scaffold_1231_12
R_WOR_2_48_11, WOR-2, Bacteria

Not on your lists


7756..8109
DNA (354bp) protein (118aa)
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
50S ribosomal protein L22 id=4171078 bin=GWC2_OP3-like_45_7 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
rplV; 50S ribosomal protein L22
bjp_ig3402_scaffold_1231_13
RBG_13_WOR_2_44_8_curated, WOR-2, Bacteria

Not on your lists


8132..8812
DNA (681bp) protein (227aa)
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_13_WOR_2_44_8_curated
30S ribosomal protein S3 id=2173676 bin=GWB2_CP_45_9 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
30S ribosomal protein S3
bjp_ig3402_scaffold_1231_14
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


8831..9250
DNA (420bp) protein (140aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=CG_Omnitr_01
50S ribosomal protein L16 id=4218993 bin=GWF2_OP3_43_52 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
50S ribosomal protein L16
bjp_ig3402_scaffold_1231_15
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


9264..9482
DNA (219bp) protein (73aa)
50S ribosomal protein L29 n=1 Tax=Clostridium sp. MSTE9 RepID=J0MWW0_9CLOT
50S ribosomal protein L29 Tax=CG_Omnitr_01
rpmC; 50S ribosomal protein L29
bjp_ig3402_scaffold_1231_16
GWA2_OP3X_41_15_curated, OP3X, Bacteria

Not on your lists


9475..9726
DNA (252bp) protein (84aa)
30S ribosomal protein S17 n=1 Tax=Candidatus Arthromitus sp. SFB-rat-Yit RepID=G2IF54_9CLOT
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=GWA2_OP3X_41_15_curated
rpsQ; 30S ribosomal protein S17
bjp_ig3402_scaffold_1231_17
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


9741..10109
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=CG_Omnitr_01
50S ribosomal protein L14 id=2173662 bin=GWB2_CP_45_9 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
50S ribosomal protein L14
bjp_ig3402_scaffold_1231_18
RBG_13_OP3X_46_9_curated, OP3X, Bacteria

Not on your lists


10129..10440
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BH94_PETMO
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RBG_13_OP3X_46_9_curated
50S ribosomal protein L24
bjp_ig3402_scaffold_1231_19
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists


10441..10983
DNA (543bp) protein (181aa)
50S ribosomal protein L5 id=4219004 bin=GWF2_OP3_43_52 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
50S ribosomal protein L5 Tax=GWF2_WOR_2_43_52_curated
rplE; 50S ribosomal protein L5
bjp_ig3402_scaffold_1231_20
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


11188..11586
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=uncultured bacterium RepID=K2B635_9BACT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
30S ribosomal protein S8
bjp_ig3402_scaffold_1231_21
RLO_WOR_2_51_8, WOR-2, Bacteria

Not on your lists


11599..12144
DNA (546bp) protein (182aa)
50S ribosomal protein L6 id=4219009 bin=GWF2_OP3_43_52 species=Commensalibacter intestini genus=Commensalibacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rplF; 50S ribosomal protein L6
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_8_curated
bjp_ig3402_scaffold_1231_22
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


12150..12509
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EBK1_THECK
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=CG_Omnitr_01
50S ribosomal protein L18
bjp_ig3402_scaffold_1231_23
RBG_13_WOR_2_44_8_curated, WOR-2, Bacteria

Not on your lists


12513..13034
DNA (522bp) protein (174aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RBG_13_WOR_2_44_8_curated
30S ribosomal protein S5 id=4263001 bin=GWC2_OP3_44_8 species=Oscillibacter valericigenes genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
30S ribosomal protein S5
bjp_ig3402_scaffold_1231_24
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


13036..13488
DNA (453bp) protein (151aa)
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=CG_Omnitr_01
50S ribosomal protein L15 id=2002108 bin=GWB2_CP_45_9 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
50S ribosomal protein L15
bjp_ig3402_scaffold_1231_25
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


13494..14840
DNA (1347bp) protein (449aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=CG_Omnitr_01
Protein translocase subunit SecY id=2002106 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
preprotein translocase subunit SecY
bjp_ig3402_scaffold_1231_26
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

14837..15514
DNA (678bp) protein (226aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
Adenylate kinase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AA58_THEID
adenylate kinase
bjp_ig3402_scaffold_1231_27
R_WOR_2_46_37, WOR-2, Bacteria

Not on your lists

15511..16254
DNA (744bp) protein (248aa)
map; methionine aminopeptidase, type i; K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_46_37_curated
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase id=2002102 bin=GWB2_CP_45_9 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
bjp_ig3402_scaffold_1231_28
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

16274..16492
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=uncultured bacterium RepID=K2AMH4_9BACT
translation initiation factor 1 (bIF-1)
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
bjp_ig3402_scaffold_1231_29
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists


16671..17051
DNA (381bp) protein (127aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=CG_Omnitr_01
SSU ribosomal protein S13P id=4219025 bin=GWF2_OP3_43_52 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rpsM; 30S ribosomal protein S13
bjp_ig3402_scaffold_1231_30
RIFOXYC2_FULL_WOR_2_45_15_curated, WOR-2, Bacteria

Not on your lists


17081..17470
DNA (390bp) protein (130aa)
Ribosomal protein S11 id=2002096 bin=GWB2_CP_45_9 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFOXYC2_FULL_WOR_2_45_15_curated
30S ribosomal protein S11
Displaying items 1-30 of 33 in total

View Taxonomy