Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
Transcription-repair coupling factor n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RZJ2_THEOJ (db=UNIREF evalue=0.0 bit_score=841.0 identity=40.0 coverage=92.88164665523156) | similarity |
UNIREF
DB: UNIREF |
40.0 | 92.88 | 841 | 0.0 | toc:Toce_0099 |
transcription-repair coupling factor | rbh |
KEGG
DB: KEGG |
41.2 | 999.99 | 841 | 3.10e-241 | toc:Toce_0099 |
transcription-repair coupling factor | similarity |
KEGG
DB: KEGG |
41.2 | 999.99 | 841 | 3.10e-241 | toc:Toce_0099 |
mfd: transcription-repair coupling factor (db=HMMTigr db_id=TIGR00580 from=153 to=1085 evalue=0.0 interpro_id=IPR004576 interpro_description=Transcription-repair coupling factor GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 0.0 | toc:Toce_0099 |
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=556 to=849 evalue=9.9e-75) | iprscan |
interpro
DB: superfamily |
null | null | null | 9.90e-75 | toc:Toce_0099 |
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=14 to=368 evalue=4.8e-56) | iprscan |
interpro
DB: superfamily |
null | null | null | 4.80e-56 | toc:Toce_0099 |
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=790 to=1000 evalue=3.6e-55) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.60e-55 | toc:Toce_0099 |
no description (db=HMMSmart db_id=SM00487 from=608 to=798 evalue=3.4e-36 interpro_id=IPR014001 interpro_description=DEAD-like helicase) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 3.40e-36 | toc:Toce_0099 |
TRCF domain-like (db=superfamily db_id=SSF143517 from=996 to=1161 evalue=3.4e-29) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.40e-29 | toc:Toce_0099 |
(db=HMMPfam db_id=PF02559 from=488 to=584 evalue=7.2e-26 interpro_id=IPR003711 interpro_description=CarD-like/TRCF domain) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 7.20e-26 | toc:Toce_0099 |
(db=HMMPfam db_id=PF03461 from=1011 to=1098 evalue=1.4e-24 interpro_id=IPR005118 interpro_description=Transcription-repair-coupling factor domain GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.40e-24 | toc:Toce_0099 |
(db=HMMPfam db_id=PF00270 from=614 to=770 evalue=2.9e-22 interpro_id=IPR011545 interpro_description=DNA/RNA helicase, DEAD/DEAH box type, N-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.90e-22 | toc:Toce_0099 |
CarD-like (db=superfamily db_id=SSF141259 from=477 to=556 evalue=5.0e-21 interpro_id=IPR003711 interpro_description=CarD-like/TRCF domain) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.00e-21 | toc:Toce_0099 |
no description (db=HMMSmart db_id=SM00490 from=834 to=918 evalue=2.8e-20 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 2.80e-20 | toc:Toce_0099 |
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=134 to=221 evalue=3.5e-20) | iprscan |
interpro
DB: Gene3D |
null | null | null | 3.50e-20 | toc:Toce_0099 |
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=800 to=940 evalue=5.5e-15) | iprscan |
interpro
DB: Gene3D |
null | null | null | 5.50e-15 | toc:Toce_0099 |
(db=HMMPfam db_id=PF00271 from=845 to=917 evalue=8.0e-15 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.00e-15 | toc:Toce_0099 |
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=615 to=791 evalue=4.6e-11) | iprscan |
interpro
DB: Gene3D |
null | null | null | 4.60e-11 | toc:Toce_0099 |
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=1 to=940 evalue=5.2e-06) | iprscan |
interpro
DB: HMMPanther |
null | null | null | 5.20e-06 | toc:Toce_0099 |
HELICASE_CTER (db=ProfileScan db_id=PS51194 from=808 to=962 evalue=15.976 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) | iprscan |
interpro
DB: ProfileScan |
null | null | null | 1.60e+01 | toc:Toce_0099 |
HELICASE_ATP_BIND_1 (db=ProfileScan db_id=PS51192 from=626 to=787 evalue=25.272 interpro_id=IPR014001 interpro_description=DEAD-like helicase) | iprscan |
interpro
DB: ProfileScan |
null | null | null | 2.53e+01 | toc:Toce_0099 |
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262794 species="Bacteria; F |
UNIPROT
DB: UniProtKB |
99.7 | 999.99 | 2055 | 0.0 | R6P3R9_9CLOT | |
clo:HMPREF0868_0408 mfd; transcription-repair coupling factor (EC:3.6.1.-); K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] alias=MEL_C1_C00001G00152 id=162249 tax=MEL_C1 species=Anaerotruncus colihominis genus=Anaerotruncus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes | similarity |
UNIREF
DB: UNIREF90 |
63.6 | null | 1205 | 0.0 | toc:Toce_0099 |