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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17701-17750 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_20236
Species: halophilic archaeon J07HX64 (50%)
2 1857 bp 57.89 5.60 92.89
qh_1_scaffold_13818
Species: Oscillochloris trichoides (100%)
1 1464 bp 53.83 5.60 99.80
qh_1_scaffold_15672 1 1339 bp 54.74 5.60 75.28
qh_1_scaffold_15914 5 2570 bp 53.31 5.60 68.40
qh_1_scaffold_8306 5 2644 bp 51.70 5.60 86.01
qh_1_scaffold_34059
Species: Strigamia maritima (100%)
1 1285 bp 57.12 5.60 47.86
qh_1_scaffold_11562 4 1662 bp 59.81 5.60 77.98
qh_1_scaffold_7899
Species: Aureobasidium pullulans (50%)
2 2124 bp 53.81 5.60 88.42
qh_1_scaffold_17593
Species: Salinibacter ruber (100%)
2 1232 bp 61.85 5.60 87.42
qh_1_scaffold_18292
Species: RBG_13_Bacteroidetes_43_22_curated (100%)
1 1196 bp 59.36 5.60 99.83
qh_1_scaffold_7690
Species: Halovivax asiaticus (50%)
2 2160 bp 46.57 5.60 97.92
qh_1_scaffold_8842 2 1981 bp 51.84 5.60 69.51
qh_1_scaffold_5158 4 2770 bp 54.37 5.60 66.93
qh_1_scaffold_11401 2 1678 bp 56.56 5.60 97.62
qh_1_scaffold_21116
Order: Halobacteriales (66.67%)
3 1071 bp 58.73 5.60 78.99
qh_1_scaffold_20653 1 1089 bp 45.27 5.60 21.76
qh_1_scaffold_20196 1 1107 bp 51.13 5.60 99.73
qh_1_scaffold_12132 2 1607 bp 57.81 5.60 72.62
qh_1_scaffold_7297 4 2232 bp 52.33 5.60 45.30
qh_1_scaffold_13097
Species: Salinibacter ruber (100%)
1 1521 bp 61.01 5.59 100.00
qh_1_scaffold_39835
Species: Halobacterium salinarum (50%)
2 1199 bp 63.72 5.59 84.07
qh_1_scaffold_13799 3 1466 bp 58.12 5.59 84.11
qh_1_scaffold_33727 4 1984 bp 59.93 5.59 86.79
qh_1_scaffold_14272 2 1430 bp 56.36 5.59 70.91
qh_1_scaffold_17530
Species: Halosimplex carlsbadense (50%)
2 1235 bp 54.01 5.59 96.68
qh_1_scaffold_21507 1 1055 bp 54.88 5.59 21.90
qh_1_scaffold_16910 1 1269 bp 54.93 5.59 62.88
qh_1_scaffold_18997
Species: Haloferax prahovense (50%)
2 1162 bp 62.91 5.59 99.66
qh_1_scaffold_22441
Species: Haloarcula vallismortis (100%)
1 1020 bp 56.37 5.59 22.35
qh_1_scaffold_11175
Species: Natrialba asiatica (100%)
2 1700 bp 45.41 5.59 94.06
qh_1_scaffold_22942 3 1002 bp 62.67 5.59 90.72
qh_1_scaffold_25769 3 1699 bp 56.50 5.59 79.99
qh_1_scaffold_17880 1 1217 bp 59.41 5.59 99.84
qh_1_scaffold_22954 3 1002 bp 60.28 5.59 55.39
qh_1_scaffold_8690 1 2002 bp 57.14 5.59 95.45
qh_1_scaffold_19310 1 1147 bp 50.92 5.58 14.12
qh_1_scaffold_7186 3 2257 bp 51.75 5.58 72.57
qh_1_scaffold_11135 3 1704 bp 60.39 5.58 80.28
qh_1_scaffold_6760 1 2347 bp 55.43 5.58 93.05
qh_1_scaffold_22420 3 1021 bp 44.56 5.58 75.81
qh_1_scaffold_3032 4 3815 bp 55.18 5.58 80.45
qh_1_scaffold_13014 3 1989 bp 54.30 5.58 86.73
qh_1_scaffold_9797 4 3116 bp 51.16 5.58 66.62
qh_1_scaffold_12113
Domain: Bacteria (50%)
4 2278 bp 59.75 5.58 79.81
qh_1_scaffold_14449 2 1417 bp 54.76 5.58 91.67
qh_1_scaffold_11686 4 1650 bp 55.88 5.58 70.55
qh_1_scaffold_13767 3 1469 bp 61.54 5.58 90.47
qh_1_scaffold_12855
Species: Salinibacter ruber (100%)
1 1540 bp 58.57 5.58 51.82
qh_1_scaffold_18165
Species: Salinibacter ruber (50%)
2 1202 bp 64.14 5.57 75.37
qh_1_scaffold_31106 2 1383 bp 56.18 5.57 85.03
Displaying items 17701-17750 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.