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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17751-17800 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_19635 2 1132 bp 52.21 5.57 45.85
qh_1_scaffold_9025 3 1957 bp 56.11 5.57 71.74
qh_1_scaffold_13430
Species: Amblyomma triste (50%)
2 1491 bp 62.17 5.57 89.54
qh_1_scaffold_25543 2 1706 bp 48.53 5.57 26.20
qh_1_scaffold_10468 3 1776 bp 39.75 5.57 94.93
qh_1_scaffold_18542
Species: Salinibacter ruber (100%)
1 1185 bp 64.39 5.57 99.75
qh_1_scaffold_18543 3 1185 bp 49.79 5.57 87.59
qh_1_scaffold_8398 2 2045 bp 52.76 5.57 38.73
qh_1_scaffold_10959
Species: Haloterrigena limicola (80%)
5 3914 bp 40.42 5.57 88.84
qh_1_scaffold_36179
Order: Halobacteriales (100%)
3 1329 bp 58.77 5.57 85.33
qh_1_scaffold_14423 2 1419 bp 32.70 5.57 73.36
qh_1_scaffold_12834
Species: Spirosoma linguale (50%)
2 3193 bp 41.03 5.57 38.71
qh_1_scaffold_17464
Species: Takifugu rubripes (50%)
2 1239 bp 51.25 5.57 84.26
qh_1_scaffold_20003
Species: Caldithrix abyssi (50%)
2 1116 bp 65.14 5.56 97.58
qh_1_scaffold_7793
Species: Rhodomicrobium vannielii (50%)
2 2142 bp 56.54 5.56 57.00
qh_1_scaffold_16790 4 1276 bp 43.65 5.56 86.52
qh_1_scaffold_9407 3 1906 bp 54.83 5.56 101.36
qh_1_scaffold_21846 1 1043 bp 49.95 5.56 28.76
qh_1_scaffold_7376 6 3870 bp 44.13 5.56 75.04
qh_1_scaffold_17759 1 2319 bp 55.28 5.56 99.87
qh_1_scaffold_8767 4 2808 bp 49.47 5.56 43.16
qh_1_scaffold_15234 4 2232 bp 53.14 5.56 23.92
qh_1_scaffold_17771
Species: Drosophila willistoni (100%)
1 1223 bp 58.95 5.56 84.63
qh_1_scaffold_17084
Species: Myotis lucifugus (100%)
1 1258 bp 56.52 5.56 99.92
qh_1_scaffold_6709 5 2358 bp 55.73 5.56 72.77
qh_1_scaffold_6492
Species: Toxoplasma gondii (100%)
1 2410 bp 57.05 5.56 99.96
qh_1_scaffold_16420 2 1296 bp 63.73 5.56 104.17
qh_1_scaffold_14126
Species: Hymenobacter swuensis (100%)
1 1440 bp 55.35 5.56 99.79
qh_1_scaffold_13209 3 1510 bp 59.54 5.56 80.46
qh_1_scaffold_13211 1 1510 bp 59.07 5.56 8.15
qh_1_scaffold_20365 2 1728 bp 57.35 5.56 34.20
qh_1_scaffold_19000 4 2193 bp 54.40 5.56 64.43
qh_1_scaffold_21350 2 1061 bp 54.57 5.56 95.85
qh_1_scaffold_20419 2 1098 bp 35.52 5.56 88.80
qh_1_scaffold_39489 2 1080 bp 50.28 5.56 96.94
qh_1_scaffold_10765 2 1744 bp 56.48 5.56 43.52
qh_1_scaffold_22750
Species: Natrinema versiforme (50%)
2 1008 bp 54.07 5.56 60.71
qh_1_scaffold_17705
Species: Natrinema sp. J7-2 (50%)
2 1226 bp 46.74 5.55 80.75
qh_1_scaffold_28362 2 1766 bp 49.49 5.55 23.10
qh_1_scaffold_11039 3 2540 bp 57.76 5.55 62.48
qh_1_scaffold_7610 5 3081 bp 54.33 5.55 40.41
qh_1_scaffold_10393 2 1784 bp 57.40 5.55 56.67
qh_1_scaffold_21292
Species: RLO_Deltaproteobacteria_60_19 (100%)
1 1064 bp 70.58 5.55 99.81
qh_1_scaffold_8823
Species: Latimeria chalumnae (100%)
1 1983 bp 38.93 5.55 74.74
qh_1_scaffold_8832
Species: BJP_08E140C01_Dechloromonas_61_78 (50%)
2 1982 bp 55.10 5.55 95.36
qh_1_scaffold_17370 3 1243 bp 62.03 5.55 64.44
qh_1_scaffold_20865
Species: Salinibacter ruber (50%)
2 1081 bp 58.56 5.55 69.94
qh_1_scaffold_8188 5 3045 bp 55.93 5.55 69.95
qh_1_scaffold_8198 9 4253 bp 54.67 5.55 85.35
qh_1_scaffold_24934 3 1496 bp 54.61 5.55 90.24
Displaying items 17751-17800 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.