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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17801-17850 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_6392 3 2431 bp 48.62 5.55 22.09
qh_1_scaffold_15408 2 1354 bp 60.49 5.54 82.20
qh_1_scaffold_6654 5 3233 bp 56.33 5.54 97.34
qh_1_scaffold_4814
Species: Haloarcula japonica (60%)
5 5092 bp 50.31 5.54 84.90
qh_1_scaffold_10380
Order: Haloferacales (50%)
4 1786 bp 43.17 5.54 78.95
qh_1_scaffold_21247 2 1065 bp 49.67 5.54 40.85
qh_1_scaffold_12932
Species: Salinibacter ruber (100%)
3 1534 bp 60.76 5.54 97.59
qh_1_scaffold_20809 2 1083 bp 53.55 5.54 75.62
qh_1_scaffold_14592 3 1407 bp 56.50 5.54 72.71
qh_1_scaffold_9071
Species: Natronorubrum bangense (50%)
2 1951 bp 54.28 5.54 100.10
qh_1_scaffold_7020 5 2291 bp 44.78 5.54 62.33
qh_1_scaffold_19940
Species: Archaeoglobus sulfaticallidus (100%)
1 1119 bp 41.47 5.54 66.76
qh_1_scaffold_27990 3 1644 bp 58.09 5.54 70.80
qh_1_scaffold_15122
Species: Haloarcula argentinensis (50%)
2 1373 bp 51.57 5.54 76.04
qh_1_scaffold_18360 1 1192 bp 51.43 5.54 99.92
qh_1_scaffold_12142
Species: Haloarcula japonica (50%)
2 1606 bp 59.78 5.54 100.50
qh_1_scaffold_19529
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 1137 bp 53.83 5.54 70.98
qh_1_scaffold_5465
Species: Paramecium tetraurelia (50%)
2 2671 bp 55.37 5.54 58.07
qh_1_scaffold_15156
Class: Halobacteria (66.67%)
3 1371 bp 49.31 5.54 100.88
qh_1_scaffold_18169 5 2316 bp 55.27 5.53 72.80
qh_1_scaffold_21691
Species: Halobiforma lacisalsi (50%)
2 1048 bp 44.18 5.53 95.61
qh_1_scaffold_25294 3 1755 bp 57.32 5.53 58.80
qh_1_scaffold_20765
Species: Natrinema altunense (50%)
2 1085 bp 54.01 5.53 91.80
qh_1_scaffold_22131 1 1031 bp 57.81 5.53 96.31
qh_1_scaffold_20776
Species: Salinibacter ruber (50%)
2 1085 bp 51.15 5.53 79.35
qh_1_scaffold_22136
Species: Natronomonas pharaonis (100%)
1 1031 bp 50.92 5.53 65.18
qh_1_scaffold_18717 3 1176 bp 57.65 5.53 74.49
qh_1_scaffold_19448 3 2132 bp 56.38 5.53 74.30
qh_1_scaffold_12091
Species: RIFOXYC2_FULL_OD1_Falkowbacteria_48_21_curated (50%)
2 1610 bp 49.63 5.53 99.88
qh_1_scaffold_30768 3 1483 bp 48.89 5.53 41.47
qh_1_scaffold_25998
Species: Salinibacter ruber (66.67%)
3 1682 bp 53.33 5.53 90.78
qh_1_scaffold_6413
Domain: Fungi (50%)
4 2427 bp 58.67 5.52 85.29
qh_1_scaffold_9460 3 2756 bp 52.10 5.52 77.18
qh_1_scaffold_2749 8 4043 bp 49.99 5.52 67.38
qh_1_scaffold_7631
Species: Capsaspora owczarzaki (50%)
2 2172 bp 54.28 5.52 85.22
qh_1_scaffold_5595
Species: Rhizophagus irregularis (50%)
2 2625 bp 33.98 5.52 82.40
qh_1_scaffold_9575 1 1884 bp 53.50 5.52 99.84
qh_1_scaffold_16281 1 1304 bp 50.61 5.52 45.32
qh_1_scaffold_19048 3 1159 bp 42.62 5.52 81.54
qh_1_scaffold_17208 1 1251 bp 53.72 5.52 96.16
qh_1_scaffold_17215 3 2499 bp 56.50 5.52 83.91
qh_1_scaffold_18643
Species: Strongylocentrotus purpuratus (50%)
2 1180 bp 53.39 5.51 99.66
qh_1_scaffold_39993
Species: Ixodes scapularis (100%)
1 1198 bp 55.18 5.51 60.35
qh_1_scaffold_11055 6 3633 bp 56.92 5.51 85.96
qh_1_scaffold_17528 1 1235 bp 57.00 5.51 60.73
qh_1_scaffold_12020
Species: Thermosynechococcus elongatus (100%)
1 1616 bp 57.36 5.51 99.88
qh_1_scaffold_18257
Genus: Natronococcus (66.67%)
3 1197 bp 61.07 5.51 102.51
qh_1_scaffold_14585
Species: Haloferax alexandrinus (50%)
2 2068 bp 52.51 5.51 98.79
qh_1_scaffold_10446
Species: Natrinema gari (100%)
1 1779 bp 41.82 5.51 31.70
qh_1_scaffold_6062
Species: Tetrahymena thermophila (50%)
2 2505 bp 57.80 5.51 91.14
Displaying items 17801-17850 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.