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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17851-17900 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_21579
Species: Halopiger xanaduensis (100%)
1 1053 bp 61.16 5.51 81.20
qh_1_scaffold_20639 1 1089 bp 63.18 5.51 100.00
qh_1_scaffold_4517 3 2996 bp 55.44 5.51 95.23
qh_1_scaffold_16287 3 2033 bp 48.35 5.51 44.27
qh_1_scaffold_14217 2 1434 bp 57.04 5.51 39.54
qh_1_scaffold_17911 1 1216 bp 56.09 5.51 26.15
qh_1_scaffold_14225
Species: Halococcus thailandensis (50%)
2 2759 bp 42.37 5.51 41.75
qh_1_scaffold_7996 3 2106 bp 53.75 5.51 29.63
qh_1_scaffold_13999
Species: uncultured archaeon A07HB70 (50%)
2 1452 bp 54.41 5.51 91.74
qh_1_scaffold_10109 4 1818 bp 51.38 5.50 75.58
qh_1_scaffold_18184 4 1201 bp 59.45 5.50 93.67
qh_1_scaffold_20489 5 2036 bp 53.68 5.50 69.40
qh_1_scaffold_23026
Species: Natronococcus occultus (50%)
2 1000 bp 47.60 5.50 72.90
qh_1_scaffold_17501
Species: Phycisphaera mikurensis (50%)
2 1236 bp 67.23 5.50 89.81
qh_1_scaffold_11797 4 2490 bp 50.24 5.50 73.13
qh_1_scaffold_18951 2 1164 bp 47.25 5.50 48.20
qh_1_scaffold_8828 1 1983 bp 54.61 5.50 99.85
qh_1_scaffold_17149 3 1255 bp 43.82 5.50 76.26
qh_1_scaffold_13710
Species: Oceanobacillus oncorhynchi (50%)
2 1472 bp 60.53 5.50 89.27
qh_1_scaffold_20629 3 1090 bp 53.21 5.50 78.44
qh_1_scaffold_16486 1 1292 bp 47.21 5.50 11.84
qh_1_scaffold_15566 1 1345 bp 53.16 5.50 32.12
qh_1_scaffold_9802 2 1855 bp 42.10 5.50 61.46
qh_1_scaffold_6372 5 2436 bp 61.00 5.50 82.39
qh_1_scaffold_11462 2 1672 bp 52.87 5.50 73.39
qh_1_scaffold_9633 4 1876 bp 51.07 5.49 63.17
qh_1_scaffold_16821
Species: human gut metagenome (50%)
2 1274 bp 46.70 5.49 69.00
qh_1_scaffold_9217 2 1931 bp 52.10 5.49 88.56
qh_1_scaffold_8314 2 2059 bp 56.68 5.49 84.80
qh_1_scaffold_18935
Species: Scytonema tolypothrichoides (100%)
1 1165 bp 48.50 5.49 91.67
qh_1_scaffold_18941
Species: Haloquadratum walsbyi (100%)
2 1165 bp 44.72 5.49 60.00
qh_1_scaffold_26528
Species: Natronorubrum bangense (50%)
2 1475 bp 57.83 5.49 49.22
qh_1_scaffold_13886 3 1458 bp 52.95 5.49 64.20
qh_1_scaffold_6511 3 2406 bp 52.29 5.49 98.88
qh_1_scaffold_13934
Species: Methyloglobulus morosus (50%)
2 1456 bp 61.95 5.49 95.81
qh_1_scaffold_22440 1 1020 bp 56.47 5.49 99.71
qh_1_scaffold_18549
Class: Halobacteria (66.67%)
3 1184 bp 50.42 5.49 81.84
qh_1_scaffold_18899
Species: RLO_RIF05_58_11 (50%)
2 1167 bp 50.81 5.48 100.00
qh_1_scaffold_37041 3 1149 bp 56.05 5.48 80.94
qh_1_scaffold_17082
Species: Phycisphaera mikurensis (100%)
1 1258 bp 64.79 5.48 86.57
qh_1_scaffold_21904
Species: Streptomyces ghanaensis (50%)
2 1040 bp 61.54 5.48 100.10
qh_1_scaffold_20084
Species: Natronomonas moolapensis (50%)
2 1113 bp 54.63 5.48 55.80
qh_1_scaffold_21908
Species: Salinibacter ruber (50%)
2 1040 bp 46.35 5.48 73.85
qh_1_scaffold_7426 4 2921 bp 55.73 5.48 67.58
qh_1_scaffold_11592
Species: Acanthamoeba castellanii (50%)
2 1660 bp 51.87 5.48 109.34
qh_1_scaffold_5144 5 2776 bp 55.76 5.48 69.49
qh_1_scaffold_10234 2 2390 bp 52.59 5.48 100.17
qh_1_scaffold_22922
Species: Haloterrigena limicola (50%)
2 1003 bp 66.00 5.48 94.82
qh_1_scaffold_8418 3 2043 bp 54.09 5.48 91.34
qh_1_scaffold_19265 3 1149 bp 57.70 5.48 67.89
Displaying items 17851-17900 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.