ggKbase home page
Advanced Search
Search Help

qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17901-17950 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_15138 3 3083 bp 52.03 5.48 30.85
qh_1_scaffold_9605
Species: Guillardia theta (50%)
2 1880 bp 52.71 5.48 74.84
qh_1_scaffold_9161
Species: Natronobacterium sp. AS-7091 (50%)
2 1939 bp 54.82 5.47 72.10
qh_1_scaffold_13576 2 1481 bp 51.99 5.47 56.52
qh_1_scaffold_13356 4 1498 bp 51.60 5.47 88.12
qh_1_scaffold_17047 2 1261 bp 61.62 5.47 63.05
qh_1_scaffold_13131 2 1517 bp 64.01 5.47 62.10
qh_1_scaffold_11755
Species: Entamoeba histolytica (100%)
1 1644 bp 55.84 5.47 99.82
qh_1_scaffold_12907
Species: Methanopyrus kandleri (100%)
1 1536 bp 61.85 5.47 86.72
qh_1_scaffold_15728 3 1335 bp 54.38 5.47 97.53
qh_1_scaffold_9307 5 1920 bp 45.05 5.47 76.41
qh_1_scaffold_31716
Species: Halovirus HCTV-5 (50%)
2 1298 bp 46.69 5.47 91.06
qh_1_scaffold_7933 4 2119 bp 56.58 5.47 40.21
qh_1_scaffold_11174 3 2633 bp 52.56 5.47 52.64
qh_1_scaffold_11177 2 1700 bp 50.71 5.47 40.76
qh_1_scaffold_11906
Species: Albugo candida (50%)
2 1628 bp 54.18 5.47 46.07
qh_1_scaffold_10997 1 1719 bp 51.89 5.47 46.77
qh_1_scaffold_16074 2 1317 bp 55.50 5.47 91.80
qh_1_scaffold_9408
Species: Mesitornis unicolor (50%)
2 1906 bp 58.39 5.46 99.00
qh_1_scaffold_10810 3 1739 bp 54.69 5.46 52.10
qh_1_scaffold_14050
Species: Paenibacillus curdlanolyticus (100%)
1 1447 bp 48.31 5.46 99.93
qh_1_scaffold_46214
Species: Clostridium sp. CAG:1013 (100%)
1 1080 bp 53.89 5.46 58.06
qh_1_scaffold_16614 4 2160 bp 54.40 5.46 57.92
qh_1_scaffold_14792
Species: Rhodospirillum centenum (50%)
2 2141 bp 53.34 5.46 92.48
qh_1_scaffold_11344 2 1684 bp 49.52 5.46 18.71
qh_1_scaffold_7893
Species: Halococcus saccharolyticus (100%)
1 2125 bp 55.76 5.46 96.00
qh_1_scaffold_14834 3 1391 bp 54.49 5.46 63.19
qh_1_scaffold_9544 5 1888 bp 54.03 5.46 82.63
qh_1_scaffold_33192
Order: Natrialbales (50%)
4 1227 bp 57.21 5.46 100.00
qh_1_scaffold_18796 3 1172 bp 58.87 5.46 99.32
qh_1_scaffold_6115 1 2491 bp 57.45 5.46 99.96
qh_1_scaffold_14242 2 1432 bp 57.82 5.45 48.39
qh_1_scaffold_14508 3 1413 bp 61.22 5.45 77.28
qh_1_scaffold_9691 3 1870 bp 56.90 5.45 89.52
qh_1_scaffold_16631 3 1285 bp 62.41 5.45 94.09
qh_1_scaffold_18031
Species: Haloferax sp. ATCC BAA-645 (100%)
1 1210 bp 48.35 5.45 70.17
qh_1_scaffold_18748 1 1174 bp 61.41 5.45 55.71
qh_1_scaffold_18751 1 1174 bp 54.86 5.45 45.23
qh_1_scaffold_15996 1 1320 bp 52.05 5.45 65.23
qh_1_scaffold_22700 3 1010 bp 56.63 5.45 85.84
qh_1_scaffold_21799 1 1045 bp 55.50 5.45 25.26
qh_1_scaffold_10773
Species: Roseobacter sp. AzwK-3b (50%)
2 1743 bp 44.23 5.45 81.41
qh_1_scaffold_17704 2 2168 bp 54.38 5.44 49.95
qh_1_scaffold_9639 3 1875 bp 48.80 5.44 96.00
qh_1_scaffold_12208 3 1599 bp 56.04 5.44 73.17
qh_1_scaffold_12222
Species: Natrinema sp. J7-2 (50%)
2 2462 bp 47.32 5.44 62.39
qh_1_scaffold_21694
Species: Haloterrigena turkmenica (50%)
2 1048 bp 63.55 5.44 60.69
qh_1_scaffold_19871 2 1121 bp 46.30 5.44 97.68
qh_1_scaffold_18028 4 1746 bp 54.58 5.44 96.91
qh_1_scaffold_18721 1 1176 bp 57.23 5.44 97.45
Displaying items 17901-17950 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.