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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17951-18000 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_21706 1 1048 bp 53.91 5.44 96.47
qh_1_scaffold_5407 3 4152 bp 50.82 5.44 40.61
qh_1_scaffold_15097 3 2188 bp 57.22 5.44 94.61
qh_1_scaffold_14647
Species: Halorubrum litoreum (60%)
5 3824 bp 51.70 5.44 69.51
qh_1_scaffold_11205 7 2594 bp 43.68 5.44 80.61
qh_1_scaffold_13510
Species: Natrinema gari (100%)
2 2152 bp 48.98 5.44 82.11
qh_1_scaffold_10978 3 2426 bp 53.42 5.44 78.15
qh_1_scaffold_9361 3 1911 bp 47.04 5.44 73.94
qh_1_scaffold_15595 1 1343 bp 54.28 5.44 73.72
qh_1_scaffold_14700 1 1400 bp 51.14 5.43 15.21
qh_1_scaffold_20262 1 1105 bp 50.41 5.43 26.61
qh_1_scaffold_19811 1 1124 bp 59.07 5.43 56.05
qh_1_scaffold_6211
Species: Salinibacter ruber (100%)
3 2470 bp 53.20 5.43 91.58
qh_1_scaffold_8526 4 2027 bp 54.76 5.43 95.31
qh_1_scaffold_22624
Species: Salinibacter ruber (50%)
2 1013 bp 57.75 5.43 49.46
qh_1_scaffold_22633
Species: Halomonas sp. KO116 (50%)
2 1013 bp 65.05 5.43 83.51
qh_1_scaffold_22646
Species: Caldilinea aerophila (50%)
2 1013 bp 57.16 5.43 69.60
qh_1_scaffold_19438 3 1141 bp 47.06 5.43 53.64
qh_1_scaffold_9337
Species: Pythium ultimum (50%)
2 1914 bp 58.10 5.43 97.81
qh_1_scaffold_39714 2 1308 bp 46.87 5.43 34.40
qh_1_scaffold_3374 6 3560 bp 58.82 5.42 97.75
qh_1_scaffold_16843
Species: Halorubrum lacusprofundi (100%)
2 1273 bp 48.94 5.42 100.16
qh_1_scaffold_19404
Species: Phytophthora infestans (100%)
1 1143 bp 51.44 5.42 92.65
qh_1_scaffold_10694
Species: Salinibacter ruber (50%)
2 1752 bp 66.61 5.42 75.86
qh_1_scaffold_27850
Class: Halobacteria (50%)
4 1661 bp 55.51 5.42 89.77
qh_1_scaffold_21126
Species: Thermococcus onnurineus (50%)
2 1070 bp 56.92 5.42 89.72
qh_1_scaffold_19320 2 1147 bp 53.79 5.41 82.91
qh_1_scaffold_11507 5 2348 bp 56.81 5.41 97.87
qh_1_scaffold_9431
Species: Salinibacter ruber (100%)
2 1903 bp 57.54 5.41 77.09
qh_1_scaffold_13593 2 1480 bp 56.42 5.41 63.24
qh_1_scaffold_13853 2 1461 bp 56.33 5.41 98.36
qh_1_scaffold_17094
Species: Salinibacter ruber (100%)
1 1258 bp 64.79 5.41 67.73
qh_1_scaffold_14103
Species: Emticicia oligotrophica (50%)
2 1442 bp 54.92 5.41 100.28
qh_1_scaffold_19878 3 1866 bp 54.77 5.41 75.88
qh_1_scaffold_21538 2 1054 bp 59.87 5.41 81.69
qh_1_scaffold_14376
Species: Chroococcales cyanobacterium CENA595 (50%)
2 1422 bp 52.88 5.41 44.09
qh_1_scaffold_17832
Species: Salinibacter ruber (100%)
1 1219 bp 59.80 5.41 99.67
qh_1_scaffold_17833 2 1219 bp 54.22 5.41 25.10
qh_1_scaffold_33259 2 1256 bp 56.37 5.41 47.53
qh_1_scaffold_17442
Species: Halorubrum sp. AJ67 (50%)
2 1239 bp 45.36 5.41 79.66
qh_1_scaffold_23011
Species: Halobacterium salinarum (50%)
2 1000 bp 65.60 5.40 73.20
qh_1_scaffold_13579
Domain: Bacteria (50%)
4 1481 bp 59.89 5.40 91.36
qh_1_scaffold_7356
Species: Sus scrofa (50%)
2 2221 bp 55.61 5.40 84.69
qh_1_scaffold_13827
Species: Helobdella robusta (100%)
1 1463 bp 54.41 5.40 99.86
qh_1_scaffold_17053
Species: Beijerinckia indica (50%)
2 1260 bp 59.29 5.40 93.33
qh_1_scaffold_12915 3 1536 bp 49.35 5.40 77.15
qh_1_scaffold_12694 2 1555 bp 59.81 5.40 86.82
qh_1_scaffold_20091
Species: Anopheles darlingi (100%)
1 1112 bp 64.39 5.40 99.82
qh_1_scaffold_11137 3 1703 bp 53.61 5.40 71.70
qh_1_scaffold_23487
Domain: Bacteria (66.67%)
3 2279 bp 53.49 5.40 56.21
Displaying items 17951-18000 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.