Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
sigB; RNA polymerase sigma-B factor | rbh |
KEGG
DB: KEGG |
100.0 | 256.0 | 501 | 1.30e-139 | sln:SLUG_09950 |
sigB; RNA polymerase sigma-B factor | similarity |
KEGG
DB: KEGG |
100.0 | 256.0 | 501 | 1.30e-139 | sln:SLUG_09950 |
RNA polymerase sigma factor n=110 Tax=Staphylococcus RepID=Q5HMF1_STAEQ (db=UNIREF evalue=4.0e-129 bit_score=464.0 identity=92.19 coverage=99.2217898832685) | similarity |
UNIREF
DB: UNIREF |
92.19 | 99.22 | 464 | 4.00e-129 | sln:SLUG_09950 |
seg (db=Seg db_id=seg from=143 to=156) | iprscan |
interpro
DB: Seg |
null | null | null | null | sln:SLUG_09950 |
SIGMA70_2 (db=PatternScan db_id=PS00716 from=224 to=250 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | sln:SLUG_09950 |
SIGMA70_1 (db=PatternScan db_id=PS00715 from=59 to=72 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | sln:SLUG_09950 |
Sigma_B: RNA polymerase sigma-B factor (db=HMMTigr db_id=TIGR02941 from=2 to=256 evalue=1.7e-206 interpro_id=IPR014288 interpro_description=RNA polymerase sigma-B type) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 1.70e-206 | sln:SLUG_09950 |
SigBFG: RNA polymerase sigma-70 factor, s (db=HMMTigr db_id=TIGR02980 from=28 to=255 evalue=9.0e-140 interpro_id=IPR014322 interpro_description=RNA polymerase sigma-B/F/G type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity | iprscan |
interpro
DB: HMMTigr |
null | null | null | 9.00e-140 | sln:SLUG_09950 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=30 to=254 evalue=2.5e-37 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 | iprscan |
interpro
DB: HMMTigr |
null | null | null | 2.50e-37 | sln:SLUG_09950 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=4 to=105 evalue=4.7e-25 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto | iprscan |
interpro
DB: superfamily |
null | null | null | 4.70e-25 | sln:SLUG_09950 |
(db=HMMPfam db_id=PF04539 from=117 to=188 evalue=5.2e-18 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 5.20e-18 | sln:SLUG_09950 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=108 to=187 evalue=8.2e-17 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
null | null | null | 8.20e-17 | sln:SLUG_09950 |
(db=HMMPfam db_id=PF04542 from=35 to=104 evalue=2.6e-16 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.60e-16 | sln:SLUG_09950 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=22 to=101 evalue=8.5e-16) | iprscan |
interpro
DB: Gene3D |
null | null | null | 8.50e-16 | sln:SLUG_09950 |
(db=HMMPfam db_id=PF04545 from=205 to=252 evalue=3.7e-15 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.70e-15 | sln:SLUG_09950 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=165 to=256 evalue=3.2e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
null | null | null | 3.20e-14 | sln:SLUG_09950 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=103 to=159 evalue=5.3e-12 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 5.30e-12 | sln:SLUG_09950 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=59 to=72 evalue=8.1e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 8.10e-10 | sln:SLUG_09950 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=239 to=250 evalue=8.1e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 8.10e-10 | sln:SLUG_09950 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=207 to=219 evalue=8.1e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 8.10e-10 | sln:SLUG_09950 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=224 to=239 evalue=8.1e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 8.10e-10 | sln:SLUG_09950 |
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;" |
UNIPROT
DB: UniProtKB |
100.0 | 256.0 | 501 | 6.30e-139 | E6MCZ1_STALU |