ggKbase | annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
3'-to-5' exoribonuclease RNase R	rbh	KEGG DB: KEGG	99.5	791.0	1557	0.0	slg:SLGD_02046
3'-to-5' exoribonuclease RNase R	similarity	KEGG DB: KEGG	99.5	791.0	1557	0.0	slg:SLGD_02046
3'-to-5' exoribonuclease RNase R n=2 Tax=Staphylococcus lugdunensis RepID=D3QEI2_STALH (db=UNIREF evalue=0.0 bit_score=1532.0 identity=99.49 coverage=97.979797979798)	similarity	UNIREF DB: UNIREF	99.49	97.98	1532	0.0	slg:SLGD_02046
seg (db=Seg db_id=seg from=745 to=768)	iprscan	interpro DB: Seg	null	null	null	null	slg:SLGD_02046
seg (db=Seg db_id=seg from=778 to=791)	iprscan	interpro DB: Seg	null	null	null	null	slg:SLGD_02046
RNase_R: ribonuclease R (db=HMMTigr db_id=TIGR02063 from=1 to=712 evalue=0.0 interpro_id=IPR011805 interpro_description=Ribonuclease R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: nuclease activity (GO:0004518))	iprscan	interpro DB: HMMTigr	null	null	null	0.0	slg:SLGD_02046
RIBONUCLEASE_II (db=PatternScan db_id=PS01175 from=548 to=572 evalue=0.0 interpro_id=IPR022966 interpro_description=Ribonuclease II/R, conserved site)	iprscan	interpro DB: PatternScan	null	null	null	0.0	slg:SLGD_02046
RIBONUCLEASE R (db=HMMPanther db_id=PTHR23355:SF9 from=70 to=775 evalue=9.4e-281)	iprscan	interpro DB: HMMPanther	null	null	null	9.40e-281	slg:SLGD_02046
RIBONUCLEASE (db=HMMPanther db_id=PTHR23355 from=70 to=775 evalue=9.4e-281)	iprscan	interpro DB: HMMPanther	null	null	null	9.40e-281	slg:SLGD_02046
3_prime_RNase: VacB and RNase II family (db=HMMTigr db_id=TIGR00358 from=57 to=711 evalue=7.1e-219 interpro_id=IPR004476 interpro_description=Ribonuclease II/ribonuclease R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540), Biological Process: RNA metabolic process (GO:0016070))	iprscan	interpro DB: HMMTigr	null	null	null	7.10e-219	slg:SLGD_02046
(db=HMMPfam db_id=PF00773 from=251 to=580 evalue=7.8e-104 interpro_id=IPR001900 interpro_description=Ribonuclease II/R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540))	iprscan	interpro DB: HMMPfam	null	null	null	7.80e-104	slg:SLGD_02046
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=631 to=737 evalue=3.6e-28 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)	iprscan	interpro DB: Gene3D	null	null	null	3.60e-28	slg:SLGD_02046
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=628 to=708 evalue=2.2e-24 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)	iprscan	interpro DB: superfamily	null	null	null	2.20e-24	slg:SLGD_02046
(db=HMMPfam db_id=PF08206 from=75 to=133 evalue=4.5e-18 interpro_id=IPR013223 interpro_description=Ribonuclease B, N-terminal OB domain)	iprscan	interpro DB: HMMPfam	null	null	null	4.50e-18	slg:SLGD_02046
no description (db=HMMSmart db_id=SM00316 from=629 to=711 evalue=1.1e-17 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1)	iprscan	interpro DB: HMMSmart	null	null	null	1.10e-17	slg:SLGD_02046
(db=HMMPfam db_id=PF00575 from=629 to=708 evalue=1.0e-15 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: HMMPfam	null	null	null	1.00e-15	slg:SLGD_02046
(db=HMMPfam db_id=PF08206 from=152 to=202 evalue=7.7e-11 interpro_id=IPR013223 interpro_description=Ribonuclease B, N-terminal OB domain)	iprscan	interpro DB: HMMPfam	null	null	null	7.70e-11	slg:SLGD_02046
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=70 to=141 evalue=1.2e-09 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)	iprscan	interpro DB: superfamily	null	null	null	1.20e-09	slg:SLGD_02046
no description (db=HMMSmart db_id=SM00357 from=74 to=136 evalue=2.5e-07 interpro_id=IPR011129 interpro_description=Cold shock protein GO=Molecular Function: nucleic acid binding (GO:0003676))	iprscan	interpro DB: HMMSmart	null	null	null	2.50e-07	slg:SLGD_02046
no description (db=HMMSmart db_id=SM00357 from=141 to=205 evalue=0.0031 interpro_id=IPR011129 interpro_description=Cold shock protein GO=Molecular Function: nucleic acid binding (GO:0003676))	iprscan	interpro DB: HMMSmart	null	null	null	3.10e-03	slg:SLGD_02046
S1 (db=ProfileScan db_id=PS50126 from=631 to=711 evalue=17.704 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))	iprscan	interpro DB: ProfileScan	null	null	null	1.77e+01	slg:SLGD_02046
RNase_R (db=HAMAP db_id=MF_01895 from=12 to=711 evalue=55.296 interpro_id=IPR011805 interpro_description=Ribonuclease R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: nuclease activity (GO:0004518))	iprscan	interpro DB: HAMAP	null	null	null	5.53e+01	slg:SLGD_02046
Ribonuclease R {ECO:0000256\|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256\|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256\|HAMAP-Rule:MF_01895};; TaxID=525377 species="Bacteria; Firmicutes; Bacilli;		UNIPROT DB: UniProtKB	99.5	791.0	1558	0.0	E6M8Z3_STALU
Ribonuclease R n=5 Tax=Staphylococcus lugdunensis RepID=D3QEI2_STALH	similarity	UNIREF DB: UNIREF90	99.5	null	1557	0.0	slg:SLGD_02046

3'-to-5' exoribonuclease RNase R

rbh

KEGG
DB: KEGG

99.5

791.0

1557

0.0

slg:SLGD_02046

3'-to-5' exoribonuclease RNase R

similarity

KEGG
DB: KEGG

99.5

791.0

1557

0.0

slg:SLGD_02046

3'-to-5' exoribonuclease RNase R n=2 Tax=Staphylococcus lugdunensis RepID=D3QEI2_STALH (db=UNIREF evalue=0.0 bit_score=1532.0 identity=99.49 coverage=97.979797979798)

similarity

UNIREF
DB: UNIREF

99.49

97.98

1532

0.0

slg:SLGD_02046

seg (db=Seg db_id=seg from=745 to=768)

iprscan

interpro
DB: Seg

null

slg:SLGD_02046

seg (db=Seg db_id=seg from=778 to=791)

iprscan

interpro
DB: Seg

null

slg:SLGD_02046

RNase_R: ribonuclease R (db=HMMTigr db_id=TIGR02063 from=1 to=712 evalue=0.0 interpro_id=IPR011805 interpro_description=Ribonuclease R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: nuclease activity (GO:0004518))

iprscan

interpro
DB: HMMTigr

null

0.0

slg:SLGD_02046

RIBONUCLEASE_II (db=PatternScan db_id=PS01175 from=548 to=572 evalue=0.0 interpro_id=IPR022966 interpro_description=Ribonuclease II/R, conserved site)

iprscan

interpro
DB: PatternScan

null

0.0

slg:SLGD_02046

RIBONUCLEASE R (db=HMMPanther db_id=PTHR23355:SF9 from=70 to=775 evalue=9.4e-281)

iprscan

interpro
DB: HMMPanther

null

9.40e-281

slg:SLGD_02046

RIBONUCLEASE (db=HMMPanther db_id=PTHR23355 from=70 to=775 evalue=9.4e-281)

iprscan

interpro
DB: HMMPanther

null

9.40e-281

slg:SLGD_02046

3_prime_RNase: VacB and RNase II family (db=HMMTigr db_id=TIGR00358 from=57 to=711 evalue=7.1e-219 interpro_id=IPR004476 interpro_description=Ribonuclease II/ribonuclease R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540), Biological Process: RNA metabolic process (GO:0016070))

iprscan

interpro
DB: HMMTigr

null

7.10e-219

slg:SLGD_02046

(db=HMMPfam db_id=PF00773 from=251 to=580 evalue=7.8e-104 interpro_id=IPR001900 interpro_description=Ribonuclease II/R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540))

iprscan

interpro
DB: HMMPfam

null

7.80e-104

slg:SLGD_02046

no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=631 to=737 evalue=3.6e-28 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)

iprscan

interpro
DB: Gene3D

null

3.60e-28

slg:SLGD_02046

Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=628 to=708 evalue=2.2e-24 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)

iprscan

interpro
DB: superfamily

null

2.20e-24

slg:SLGD_02046

(db=HMMPfam db_id=PF08206 from=75 to=133 evalue=4.5e-18 interpro_id=IPR013223 interpro_description=Ribonuclease B, N-terminal OB domain)

iprscan

interpro
DB: HMMPfam

null

4.50e-18

slg:SLGD_02046

no description (db=HMMSmart db_id=SM00316 from=629 to=711 evalue=1.1e-17 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1)

iprscan

interpro
DB: HMMSmart

null

1.10e-17

slg:SLGD_02046

(db=HMMPfam db_id=PF00575 from=629 to=708 evalue=1.0e-15 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: HMMPfam

null

1.00e-15

slg:SLGD_02046

(db=HMMPfam db_id=PF08206 from=152 to=202 evalue=7.7e-11 interpro_id=IPR013223 interpro_description=Ribonuclease B, N-terminal OB domain)

iprscan

interpro
DB: HMMPfam

null

7.70e-11

slg:SLGD_02046

Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=70 to=141 evalue=1.2e-09 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)

iprscan

interpro
DB: superfamily

null

1.20e-09

slg:SLGD_02046

no description (db=HMMSmart db_id=SM00357 from=74 to=136 evalue=2.5e-07 interpro_id=IPR011129 interpro_description=Cold shock protein GO=Molecular Function: nucleic acid binding (GO:0003676))

iprscan

interpro
DB: HMMSmart

null

2.50e-07

slg:SLGD_02046

no description (db=HMMSmart db_id=SM00357 from=141 to=205 evalue=0.0031 interpro_id=IPR011129 interpro_description=Cold shock protein GO=Molecular Function: nucleic acid binding (GO:0003676))

iprscan

interpro
DB: HMMSmart

null

3.10e-03

slg:SLGD_02046

S1 (db=ProfileScan db_id=PS50126 from=631 to=711 evalue=17.704 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723))

iprscan

interpro
DB: ProfileScan

null

1.77e+01

slg:SLGD_02046

RNase_R (db=HAMAP db_id=MF_01895 from=12 to=711 evalue=55.296 interpro_id=IPR011805 interpro_description=Ribonuclease R GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: nuclease activity (GO:0004518))

iprscan

interpro
DB: HAMAP

null

5.53e+01

slg:SLGD_02046

Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=525377 species="Bacteria; Firmicutes; Bacilli;

UNIPROT
DB: UniProtKB

99.5

791.0

1558

0.0

E6M8Z3_STALU

Ribonuclease R n=5 Tax=Staphylococcus lugdunensis RepID=D3QEI2_STALH

similarity

UNIREF
DB: UNIREF90

99.5

null

1557

0.0

slg:SLGD_02046

CARSLU_59_29 Annotations

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